BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZG11RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1184 1308 0.0
>3x_Contig1184
Length = 5183
Score = 1308 bits (660), Expect = 0.0
Identities = 708/719 (98%), Gaps = 4/719 (0%)
Strand = Plus / Plus
Query: 45 caagaacgacggactcaattttgcatgtggtacttccaacggttactcttatatatacga 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3481 caagaacgacggactcaattttgcatgtggtacttccaacggttactcttatatatacga 3540
Query: 105 cttaagaacttctgaaccaagcatagtgaaggatcagggttatggttttgcagtgaacaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3541 cttaagaacttctgaaccaagcatagtgaaggatcagggttatggttttgcagtgaacaa 3600
Query: 165 gattatatggttagattcagtagaggattccaacaaaattttgacatgtgataagagaat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3601 gattatatggttagattcagtagaggattccaacaaaattttgacatgtgataagagaat 3660
Query: 225 tgccaagatatggaataagaacgatggtaaagcttatgcctcaatggaaccaagtgttga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3661 tgccaagatatggaataagaacgatggtaaagcttatgcctcaatggaaccaagtgttga 3720
Query: 285 tatcaacgatattgagcatgttccaggcactggtatgtttttcacagccaatgaaggtat 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3721 tatcaacgatattgagcatgttccaggcactggtatgtttttcacagccaatgaaggtat 3780
Query: 345 tccaatgcatacgtattatattccaaatctagggccagcgccaaggtggtgttcgttctt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3781 tccaatgcatacgtattatattccaaatctagggccagcgccaaggtggtgttcgttctt 3840
Query: 405 ggattcgatcacagaagaattggaagagaaaccaagcgattctgtttactcgaactacag 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3841 ggattcgatcacagaagaattggaagagaaaccaagcgattctgtttactcgaactacag 3900
Query: 465 attcatcacgaaggcagatgtgaagaaattgaatttgactcacttgattggctccaaggt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3901 attcatcacgaaggcagatgtgaagaaattgaatttgactcacttgattggctccaaggt 3960
Query: 525 tttgagagcatacatgcacggtttcttcatcaatacagagttgtatgataaggtagcatt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3961 tttgagagcatacatgcacggtttcttcatcaatacagagttgtatgataaggtagcatt 4020
Query: 585 gattgctaatccaaactctttacgtgatgaaagagaaagagaaattagacgtcggattga 644
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4021 gattgctaatccaaactcttaccgtgatgaaagagaaagagaaattagacgtcggattga 4080
Query: 645 aaaggaaagagaatcaagattc-agagtncaggtgctattactacatttaaggtc-aggt 702
||||||||||||||||||| || ||||| |||||||||||||||||| ||||||| ||||
Sbjct: 4081 aaaggaaagagaatcaagaatcaagagtacaggtgctattactacatctaaggtcaaggt 4140
Query: 703 taacaagatgtttgttgataatttgagc-aaaaacgtggtgat-aagttgctggtaaag 759
|||||||||||| |||||||| |||||| |||||||||||||| |||||||||||||||
Sbjct: 4141 taacaagatgttggttgataagttgagcgaaaaacgtggtgataaagttgctggtaaag 4199
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7744
Number of Sequences: 1807
Number of extensions: 7744
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)