BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZG12FM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig791 724 0.0
>3x_Contig791
Length = 3989
Score = 724 bits (365), Expect = 0.0
Identities = 447/469 (95%), Gaps = 4/469 (0%)
Strand = Plus / Minus
Query: 88 atcagatccatatttcagcacaatggtatcgagggccgatatcgttaaaagtatacccta 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3606 atcagatccatatttcagcacaatggtatcgagggccgatatcgttaaaagtatacccta 3547
Query: 148 tcttgtgttgggaacaccctctactttattcgaactaaaagacaagaagttcacaatacc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3546 tcttgtgttgggaacaccctctactttattcgaactaaaagacaagaagttcacaatacc 3487
Query: 208 cagcaatattccgaacggagaaagccaacagttgcatgatatcgttgaagcaggcttact 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3486 cagcaatattccgaacggagaaagccaacagttgcatgatatcgttgaagcaggcttact 3427
Query: 268 ttacttgcaccttcaaattagagtggaatatcttaaaaaacatgttaccaccagtacact 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3426 ttacttgcaccttcaaattagagtggaatatcttaaaaaacatgttaccaccagtacact 3367
Query: 328 aaaagtagcatttttgacattgattcaaagtaaacttcgagattat-gtaatttcgtcaa 386
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3366 aaaagtagcatttttgacattgattcaaagtaaacttcgagattatagtaatttcgtcaa 3307
Query: 387 caatttct-at-ccacttacattcactccattcattatgttttacatatcaaacactcta 444
|||||||| || |||||||||| ||||| || |||||||||||||||||||| |||||
Sbjct: 3306 caatttctcatcccacttacatccactcgatccattatgttttacatatcaacacctcta 3247
Query: 445 ttctgaattactaaaactaagaacattatttgaatttatttgaaaacttttgaaaaagca 504
| ||||| ||||||||||||| |||| | |||| || |||| |||||| ||||||||
Sbjct: 3246 tcctgaagtactaaaactaaggacatatatggaatata-ttgataactttgaaaaaagca 3188
Query: 505 gtgcagagggattactatctgtatgccagttacaaaaaattaatggtga 553
||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3187 gtgcagagggattactatctgtatgccagttacaaaaaagtaatggtga 3139
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8756
Number of Sequences: 1807
Number of extensions: 8756
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)