BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZG12RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig656 1078 0.0
>3x_Contig656
Length = 1941
Score = 1078 bits (544), Expect = 0.0
Identities = 617/634 (97%), Gaps = 6/634 (0%)
Strand = Plus / Plus
Query: 144 gaaacagtcaacaaaatctatggagttgatttcttctgtctagatagtaatcgatgggat 203
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gaaagagtcaacaaaatctatggagttgatttcttctgtctagatagtaatcgatgggat 69
Query: 204 ttcgttgagttctattcttacggatttccaatcataccagaagaagaatatgcaagctct 263
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 ttcgttgagttcgattctaacggatttccaatcataccagaagaagaatatgcaagctct 129
Query: 264 tccaatcaacagcaacagcacccgtgccatgatttgaagaaattactatcgaacggatca 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tccaatcaacagcaacagcacccgtgccatgatttgaagaaattactatcgaacggatca 189
Query: 324 ttctattatagttccgatttcgatctaacatctttactacagtctagaggtctcaaccag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttctattatagttccgatttcgatctaacatctttactacagtctagaggtctcaaccag 249
Query: 384 cattcgttatccttcgataattaccaagaagagtacatgtggaattcctttttaatgcaa 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cattcgttatccttcgataattaccaagaagagtacatgtggaattcctttttaatgcaa 309
Query: 444 gaaatcatcacatttagaaaccatttggacgataaagccaagcaaataatggatgatgaa 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gaaatcatcacatttagaaaccatttggacgataaagccaagcaaataatggatgatgaa 369
Query: 504 ggattcttaacgacagtgatcagaggttttgctgaaactttccccatcatatatc-gcag 562
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 370 ggattcttaacgacagtgatcagaggttttgctgaaacttt-cccatcatatatcggcag 428
Query: 563 aatgcccgtcaatttaactatgatatcaaaacaatcttggaaaagagcgggaaacagatt 622
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 429 aatgcccgtcaatttaactatgatatcaaaacaatcttggaaaagagcgggaacaagatt 488
Query: 623 taatgttagaggtattgatgacgangcaaatgtagcaaacttttgtgaaactgaatttat 682
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 489 taatgttagaggtattgatgacgaggcaaatgtagcaaacttttgtgaaactgaatttat 548
Query: 683 tatgtattcagaggaatactgcttttgctgtgacagaaattanagggagtggtaccttgt 742
|||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||| |||
Sbjct: 549 tatgtattcagaggaatactgc-tttgctgtgacagaaattagaggaagt-gtacc-tgt 605
Query: 743 ttcctgggaacaagaatacagctttattcaatcc 776
|| ||||||||||| |||||||| || |||||||
Sbjct: 606 tttctgggaacaag-atacagctctaatcaatcc 638
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7804
Number of Sequences: 1807
Number of extensions: 7804
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)