BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZH02FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1626 482 e-136
>3x_Contig1626
Length = 17698
Score = 482 bits (243), Expect = e-136
Identities = 330/347 (95%), Gaps = 9/347 (2%)
Strand = Plus / Plus
Query: 85 accaggcatgtcgttttacctgcgaaacttccattgtccattctcttcatcacttcgaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8900 accaggcatgtcgttttacctgcgaaacttccattgtccattctcttcatcacttcgaaa 8959
Query: 145 tgagaaataaattggctctttagctctttttcactaagaaacttttcaaaagttgaaaat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8960 tgagaaataaattggctctttagctctttttcactaagaaacttttcaaaagttgaaaat 9019
Query: 205 cttaaagatattaatcgtaagagaatcagggaaactacagcatttgatctgtgaagagcc 264
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9020 cttaaagatataaaacgtaagagaatcagggaaactacagcatttgatctgtgaagagcc 9079
Query: 265 tgagacaaccccagcagaccaccagcataccacagggcagataaagtaaagaaatgttag 324
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 9080 tgagacaaccccagcagaccaccagcataccaca-ggcagataaagtaaagaaatgttag 9138
Query: 325 aaccctagtccatacccagacccccaagacatgggaagatgactcccggcaatgaacccg 384
|| ||||||||||||| ||| || |||||||| ||||||||||| ||||||||| | |||
Sbjct: 9139 aa-cctagtccataccaaga-ccacaagacat-ggaagatgact-ccggcaatg-atccg 9193
Query: 385 ggccagaacagcctttctttaagaagaaccctaatggggattagtta 431
||||| |||||| ||||| |||||||| |||||| |||||||||||
Sbjct: 9194 tgccag-acagccattcttcaagaagaa-cctaat-gggattagtta 9237
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7217
Number of Sequences: 1807
Number of extensions: 7217
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)