BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZH03FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1092 912 0.0
3x_Contig178 751 0.0
>3x_Contig1092
Length = 2520
Score = 912 bits (460), Expect = 0.0
Identities = 557/578 (96%), Gaps = 9/578 (1%)
Strand = Plus / Plus
Query: 87 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 293
Query: 147 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 353
Query: 207 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 413
Query: 267 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 473
Query: 327 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacancttgttg 386
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 474 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 533
Query: 387 gacagcatgatattatgaaagatatatgatcaaattgtaccattatcgagcacttgtgat 446
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 593
Query: 447 aaataaatacacgnacccctgaatttgaaaaagaaaaatctttgataaatattggtgttg 506
||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 594 aaataaatacacgga-ccctgaatttgaaaaagaaaaatctttgataaata-tggtgttg 651
Query: 507 catctattgaacagagatatagcagaaggcgt-acgagaaaattaatctttcatgggact 565
||||||||||||||||||| ||||| |||||| ||||||||||||||||| ||||||||
Sbjct: 652 catctattgaacagagata-agcag-aggcgtaacgagaaaattaatcttcaatgggact 709
Query: 566 tagtcaaaactgttatcatttgtaaattgagagtgaattgaatatgtttaccggattctt 625
|||||||||||| ||||| ||||| ||||||||||||||||||||| |||| ||| |||
Sbjct: 710 tagtcaaaactg-tatcagttgtagattgagagtgaattgaatatggttacggga-tcta 767
Query: 626 atgaattcacgtgatactacttggaacaaagggcacct 663
||| | |||||||||||||||||| ||||||| |||||
Sbjct: 768 atg-agtcacgtgatactacttgg-acaaaggccacct 803
>3x_Contig178
Length = 1315
Score = 751 bits (379), Expect = 0.0
Identities = 418/429 (97%), Gaps = 2/429 (0%)
Strand = Plus / Minus
Query: 87 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 146
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 856 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtccggtgcgt 797
Query: 147 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 206
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 796 actgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcga 737
Query: 207 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 677
Query: 267 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 326
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 676 atcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgt 617
Query: 327 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacancttgttg 386
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 616 tggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagttgttg 557
Query: 387 gacagcatgatattatgaaagatatatgatcaaattgtaccattatcgagcacttgtgat 446
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 497
Query: 447 aaataaatacacgnacccctgaatttgaaaaagaaaaatctttgataaatattggtgttg 506
||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 496 aaataaatacacgga-ccctgaatttgaaaaagaaaaatctttgataaata-tggtgttg 439
Query: 507 catctattg 515
|||||||||
Sbjct: 438 catctattg 430
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,139
Number of Sequences: 1807
Number of extensions: 14139
Number of successful extensions: 118
Number of sequences better than 1.0e-20: 2
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)