BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZH03RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig634 1074 0.0
>3x_Contig634
Length = 1748
Score = 1074 bits (542), Expect = 0.0
Identities = 549/550 (99%), Gaps = 1/550 (0%)
Strand = Plus / Minus
Query: 52 cttctatactatggcagaggagctgaaaggatttcctcatgagagactatctatctcatt 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cttctatactatggcagaggagctgaaaggatttcctcatgagagactatctatctcatt 490
Query: 112 gaggagtaattcacagcaatatcaagatattcttttgttttttgatgattatcagtttga 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gaggagtaattcacagcaatatcaagatattcttttgttttttgatgattatcagtttga 430
Query: 172 tttggatagcaccaaccagcacttgtgtagtctggcagaattactgttaaagtctcatac 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tttggatagcaccaaccagcacttgtgtagtctggcagaattactgttaaagtctcatac 370
Query: 232 actgttggcagagctgttttctgatgatgtgagcgtttctcaactcttaccgtattttga 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 actgttggcagagctgttttctgatgatgtgagcgtttctcaactcttaccgtattttga 310
Query: 292 ttggattcaagagggaagatctgaattttatcagctcttcaacgggataaagaccatcga 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttggattcaagagggaagatctgaattttatcagctcttcaacgggataaagaccatcga 250
Query: 352 aaaggtgttgctgcatctgatggaaatcatcgaagaggaatttgggtgtaatgaagatga 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aaaggtgttgctgcatctgatggaaatcatcgaagaggaatttgggtgtaatgaagatga 190
Query: 412 actattccagaaggagttgactgcactttttgatttattagaggagatatcagatacatt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 actattccagaaggagttgactgcactttttgatttattagaggagatatcagatacatt 130
Query: 472 agtgtccataaaaccaatcatctcatcattaaaaaacctgttcgacaccgccatagagtt 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 agtgtccataaaaccaatcatctcatcattaaaaaacctgttcgacaccgccatagagtt 70
Query: 532 caacgaaatattcaaagatcatatgaacagtctagatgaagagatagaaaacaatttgtc 591
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 69 caacgaaatattcaaagatcatatgaacagtctagatgaagagatagaaaacaa-ttgtc 11
Query: 592 taaatgcatt 601
||||||||||
Sbjct: 10 taaatgcatt 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7822
Number of Sequences: 1807
Number of extensions: 7822
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)