BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZH04FM1.SCF screened BAC_end
(889 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig805 507 e-143
>3x_Contig805
Length = 3584
Score = 507 bits (256), Expect = e-143
Identities = 313/326 (96%), Gaps = 6/326 (1%)
Strand = Plus / Minus
Query: 86 ccgtttcttagtagtttcggtgtctgaattgtttatgatatgagatcgggattgctgtga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3004 ccgtttcttagtagtttcggtgtctgaattgtttatgatatgagatcgggattgctgtga 2945
Query: 146 cagtttgtacaaaaggtcctccgaagattctgatcttgatgaggtcgatgcaacagatga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2944 cagtttgtacaaaaggtcctccgaagattctgatcttgatgaggtcgatgcaacagatga 2885
Query: 206 tacggtgctatacatagatatcatctcttgagtatcaaaggtatctgttgtgctacctga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2884 tacggtgctatacatagatatcatctcttgagtatcaaaggtatctgttgtgctacctga 2825
Query: 266 agctacactatccctccttttgcttgccgatgatggctttggaagtagttttgggtttac 325
||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct: 2824 agctacactatccctccttttgcttgccgatgatggctttggaggtagttct-ggtttac 2766
Query: 326 ttttc-naaaactagacaacagagccc--aagcccaatttgggt-cacttttctgctt-a 380
||||| |||||||||||||||||||| ||||| ||||||||| |||||| |||||| |
Sbjct: 2765 ttttcgaaaaactagacaacagagccccaaagccaaatttgggtccactttcctgcttca 2706
Query: 381 agttttcactttctgcaatgtaattg 406
||||||||||||||||| ||| ||||
Sbjct: 2705 agttttcactttctgcagtgtcattg 2680
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,974
Number of Sequences: 1807
Number of extensions: 11974
Number of successful extensions: 164
Number of sequences better than 1.0e-20: 1
length of query: 889
length of database: 10,358,551
effective HSP length: 16
effective length of query: 873
effective length of database: 10,329,639
effective search space: 9017774847
effective search space used: 9017774847
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)