BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC44ZH05FM1.SCF screened BAC_end (961 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1346 787 0.0 >3x_Contig1346 Length = 6154 Score = 787 bits (397), Expect = 0.0 Identities = 515/540 (95%), Gaps = 11/540 (2%) Strand = Plus / Minus Query: 87 ctaaatttgttggaccatcaatca-ttctagcgtacttgccatacaactcagaaagagac 145 |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 6049 ctaaatttgttggaccgtcaatcaattctagcgtacttgccatacaactcagaaagagac 5990 Query: 146 actccactagaagttttaaaagaaaccaaaattggtgtcgaaagtggttactggccttta 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 5989 actccactagaagttttaaaagaaaccaaaattggtgtcgaaagtggttactggccgtta 5930 Query: 206 tacaggtttaacccttacgaagaacgcgacgaccaagttttcaaattggactcctctgtt 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5929 tacaggtttaacccttacgaagaacgcgacgaccaagttttcaaattggactcctctgtt 5870 Query: 266 atcaaacaacaactgaagggactttttagacccgagagaattagctcactctttctagct 325 ||||||||||||||||| |||||||||||| |||||||||| ||||||||| |||||||| Sbjct: 5869 atcaaacaacaactgaa-ggactttttaga-ccgagagaataagctcactc-ttctagct 5813 Query: 326 caaaagtccccagagcttgccagaaaatttgagcattccgnctcagatgcgattcaattg 385 |||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| Sbjct: 5812 caaaagtccccagagcttgccagaaatttgaagcattccgcctcagatgcgattcaattg 5753 Query: 386 aaacaagacagaagggctaaagcagcatttcgatcaactctttagaaagtctcttctgcc 445 ||||||||||||||||||||||||||| |||||||||||| |||||| ||||| |||| | Sbjct: 5752 aaacaagacagaagggctaaagcagca-ttcgatcaactc-ttagaaggtctc-tctggc 5696 Query: 446 cctcctcttcacatttatcatgcttttgacggtggcaatgcagcttaattagcaaaaaga 505 ||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||| Sbjct: 5695 cctcctcttcacatttatcatgcttctgacggtggcaatgcagctaatttagcaaaaaga 5636 Query: 506 ttgggtacaagggcatctgctagaaggtct-aaaactattgtactatcaatggaagaaat 564 ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| || Sbjct: 5635 ttgggtacaagggcatctgctag-aggtctaaaaactattgtactatcaatggaagacat 5577 Query: 565 tgttctagaaga-ttacccggtgaagagaatgttgtatttataacgtc-actgctggtca 622 |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 5576 tgttctagaagagttaccaggtgaagagaatgttgtatttataacgtcaactgctggtca 5517 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8975 Number of Sequences: 1807 Number of extensions: 8975 Number of successful extensions: 119 Number of sequences better than 1.0e-20: 1 length of query: 961 length of database: 10,358,551 effective HSP length: 16 effective length of query: 945 effective length of database: 10,329,639 effective search space: 9761508855 effective search space used: 9761508855 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)