BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZH05RM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1795 1400 0.0
>3x_Contig1795
Length = 38452
Score = 1400 bits (706), Expect = 0.0
Identities = 843/873 (96%), Gaps = 13/873 (1%)
Strand = Plus / Plus
Query: 48 cccgacgtgattcctgttagtgctgctcagaatgttgtgaaaatgtctccaccaaacaag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1407 cccgacgtgattcctgttagtgctgctcagaatgttgtgaaaatgtctccaccaaacaag 1466
Query: 108 gagggtgccattgacaatattccgttagaggtgcttgatccgaagaggttcaaaagagcc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1467 gagggtgccattgacaatattccgttagaggtgcttgatccgaagaggttcaaaagagcc 1526
Query: 168 cctccaagggaaagtaatatggtggacacttcaattgatacggcaacgtatcgggcagat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1527 cctccaagggaaagtaatatggtggacacttcaattgatacggcaacgtatcgggcagat 1586
Query: 228 caacagaagattgagagcctcactaagagtattgaagaggagaaacctgaatatttgttc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1587 caacagaagattgagagcctcactaagagtattgaagaggagaaacctgaatatttgttc 1646
Query: 288 ccctggttctctgttggaggatttaatgtagtcaagaatcctgctactcagatgaaatcc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1647 ccctggttctctgttggaggatttaatgtagtcaagaatcctgctactcagatgaaatcc 1706
Query: 348 tctcgtgttgtgaagtcgtatgttgtggaaaactactacaacgattggtatagtaacact 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1707 tctcgtgttgtgaagtcgtatgttgtggaaaactactacaacgattggtatagtaacact 1766
Query: 408 gctggtgttgtcggtacttgcttcttctcttggttactttcttacttgaacttttcatgg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 gctggtgttgtcggtacttgcttcttctcttggttactttcttacttgaacttttcatgg 1826
Query: 468 tggtccttgggatttgtgttcttttgcactgcatccgtgtatagagcagagttccgtcga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827 tggtccttgggatttgtgttcttttgcactgcatccgtgtatagagcagagttccgtcga 1886
Query: 528 ttcaatagaaacattagagacgatatgaaaagaatcaccgtcgaagagaccttgagcgac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 ttcaatagaaacattagagacgatatgaaaagaatcaccgtcgaagagaccttgagcgac 1946
Query: 588 cgtaccgaaagttcagtatggctgaactccttcctatccaagttctggacaatttatatg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 cgtaccgaaagttcagtatggctgaactccttcctatccaagttctggacaatttatatg 2006
Query: 648 ccagttttgtcccaacaagttaaggatgcagttaatccacagtttagctggtgtcgctcc 707
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2007 ccagttttgtcccaacaagttaaggatgcagttaatccacag-ttagctggtgtcgctcc 2065
Query: 708 tgggtacggtattgacgcgttgtcccttgaatgaattcacctcttggtacccaagctcca 767
||||||||||||||||||||||| ||||||||||||||| ||||||||||| | ||||||
Sbjct: 2066 tgggtacggtattgacgcgttgt-ccttgaatgaattca-ctcttggtaccaaggctcca 2123
Query: 768 accaatggatgccatttaatcgttcacccaaaaaaggaaatggtggtcttggaaaatgga 827
||| || ||||||||| |||||| || |||| |||||| ||||| ||| ||| |||||||
Sbjct: 2124 acc-attgatgccattaaatcgtaca-ccaagaaaggagatggt-gtcgtgg-aaatgga 2179
Query: 828 ttggaacttgtttttttcacttccaaatgatgaattcaaactttacttccaaaggaagcc 887
||||| ||| | |||||| ||||||||||||| |||||| | || ||||||||||| |
Sbjct: 2180 ttgga--ctgtatctttcac-tccaaatgatgaa-tcaaacatgac-tccaaaggaag-c 2233
Query: 888 ccagaacaaaatcacccccaaaattgccttggg 920
| |||||||||||| ||| || |||||||||||
Sbjct: 2234 caagaacaaaatcaacccaaagattgccttggg 2266
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6475
Number of Sequences: 1807
Number of extensions: 6475
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)