BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZH06FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1192 509 e-144
>3x_Contig1192
Length = 5015
Score = 509 bits (257), Expect = e-144
Identities = 306/317 (96%), Gaps = 4/317 (1%)
Strand = Plus / Minus
Query: 88 ctctttgaatggcattcgctaaaagagcctgcccagtgcgtatcatacaaccccaaccaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4654 ctctttgaatggcattcgctaaaagagcctgcccagtgcgtatcatacaaccccaaccaa 4595
Query: 148 tatctgaataaaaactgtcaggatcagttaaagcattttctaatgtgttgataggattat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4594 tatctgaataaaaactgtcaggatcagttaaagcattttctaatgtgttgataggattat 4535
Query: 208 ctctaaaaaaatgggtaaaattgataggagatggtccattctcatttctgcggatagggg 267
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4534 ctctaaaaaaaagggtaaaattgataggagatggtccattctcatttctgcggatagggg 4475
Query: 268 taaactgtgtgcggtatgtgaagaacacttcgtg-atgtacgtcagac-aaagtccagga 325
|||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 4474 taaactgtgtgcggtatgtgaagaacac-tcgtgaatgtacgtcagacaaaagtccagga 4416
Query: 326 ttttatgagacgatatttatcatgcttttcaaggcccgattcatctgtttccacattcct 385
||| |||||||||||||||||| ||||| ||||| |||| |||||||||||||||| | |
Sbjct: 4415 tttaatgagacgatatttatcaggctttccaagg-ccgagtcatctgtttccacatccgt 4357
Query: 386 tcttgatttattgttaa 402
|||||||||||||||||
Sbjct: 4356 tcttgatttattgttaa 4340
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,205
Number of Sequences: 1807
Number of extensions: 16205
Number of successful extensions: 108
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)