BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZH06RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1723 797 0.0
3x_Contig1790 202 9e-52
3x_Contig1802 123 7e-28
3x_Contig1560 101 2e-21
>3x_Contig1723
Length = 15177
Score = 797 bits (402), Expect = 0.0
Identities = 404/405 (99%)
Strand = Plus / Minus
Query: 47 tgtatgtgtgacttgctctaaaagtcagcaagaaaccctcaggtactgcaatattaggtt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgtatgtgtgacttgctctaaaagtcagcaagaaaccctcaggtactgcaatattaggtt 379
Query: 107 agcaggtgacgcagacgttacagtttcctttggtcgatagatgtggcaactgcagatgct 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agcaggtgacgcagacgttacagtttcctttggtcgatagatgtggcaactgcagatgct 319
Query: 167 tttcgttcttgggaagtaacagcagctatactctcttgaccattaatgctttttttctcg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tttcgttcttgggaagtaacagcagctatactctcttgaccattaatgctttttttctcg 259
Query: 227 gtctactcatttctttcttgtgacaatgagaaaaagcatgaatccgaggggcctacgctg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gtctactcatttctttcttgtgacaatgagaaaaagcatgaatccgaggggcctacgctg 199
Query: 287 tcattgcagcttgtttaaaatatactctcagaatatgtacaggaaataatttttatcacg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tcattgcagcttgtttaaaatatactctcagaatatgtacaggaaataatttttatcacg 139
Query: 347 tactgctttgttcattgcatttgggaaattttgcagaanagtttggtgaaatattcaaaa 406
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 138 tactgctttgttcattgcatttgggaaattttgcagaaaagtttggtgaaatattcaaaa 79
Query: 407 cgacaaacgacatatatagcaaagtgattgattaaagcagcaata 451
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 cgacaaacgacatatatagcaaagtgattgattaaagcagcaata 34
>3x_Contig1790
Length = 27369
Score = 202 bits (102), Expect = 9e-52
Identities = 254/297 (85%), Gaps = 8/297 (2%)
Strand = Plus / Minus
Query: 460 tgttggactggantattcatcatgtttggtagtaggggcttggcctagagggttagtagt 519
|||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5307 tgttgggctgga-tattcatcatgtttggtagtagggacttggcctagagggttagtagt 5249
Query: 520 attaaacgtattggatgccattctgacttgtagttgntaatgaaataatggataat-aaa 578
||| | | ||||||||||||||||||||||| ||||||| |||||||| | |||
Sbjct: 5248 attggtgtaaatagatgccattctgacttgtagttgttaatgaataaatggatagttaaa 5189
Query: 579 gtggtgatcgactagttaaagtaattactttacgg-gttctncttgggtttcttacatca 637
||||||||||||| |||| |||||||| |||| | ||| |||| |||||||||||
Sbjct: 5188 ttggtgatcgactaattaagtaaattactt-acggtgctctccttg--tttcttacatct 5132
Query: 638 gacatnatagttaatgtagaacaaatatttattatgtcgtcaaatccaaacggggaaatt 697
||||| |||||||||||||||| || ||| |||||| ||||||||| | || |||||
Sbjct: 5131 gacatacaagttaatgtagaacaa-taattaatatgtcatcaaatccagatggaaaaatt 5073
Query: 698 ggatgaagaaaccatctactgatttactttttcagattgggcttncaatcaccaaac 754
|||||||||||||||||||| || ||| |||||||||||||||| ||||||||||||
Sbjct: 5072 ggatgaagaaaccatctacttatatac-ttttcagattgggctttcaatcaccaaac 5017
>3x_Contig1802
Length = 45229
Score = 123 bits (62), Expect = 7e-28
Identities = 100/109 (91%), Gaps = 3/109 (2%)
Strand = Plus / Plus
Query: 460 tgttggactggantattcatcatgtttggtagtaggggcttggcctagagggttagtagt 519
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 45091 tgttggactgga-tattcatcaaaaatggtagtaggggcttggcctagagggttagtagt 45149
Query: 520 attaaacgt-attggatgccattctgacttgtagttgntaatgaaataa 567
||| ||||| ||||||||||||||||||||||||||| |||||| ||||
Sbjct: 45150 att-aacgtaattggatgccattctgacttgtagttgttaatgatataa 45197
>3x_Contig1560
Length = 9209
Score = 101 bits (51), Expect = 2e-21
Identities = 125/148 (84%), Gaps = 2/148 (1%)
Strand = Plus / Plus
Query: 624 ggtttcttacatcagacatnatagttaatgtagaacaaatatttattatgtcgtcaaatc 683
||||||||||||| ||||| | ||||||||||||||||| ||| ||||||||||||||
Sbjct: 2252 ggtttcttacatctgacatataacttaatgtagaacaaata-ttagtatgtcgtcaaatc 2310
Query: 684 caaacggggaaattggatgaagaaaccatctactgatttactttttcagattgggcttnc 743
|| | ||| | || ||||||||||||| |||| | || |||||||| ||||||||||| |
Sbjct: 2311 cagaggggaagataggatgaagaaaccttctagttatatacttttt-agattgggcttcc 2369
Query: 744 aatcaccaaactttgcanccttgatcct 771
||||| ||||| || | ||||||||||
Sbjct: 2370 aatcatcaaacgctgtagccttgatcct 2397
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6500
Number of Sequences: 1807
Number of extensions: 6500
Number of successful extensions: 110
Number of sequences better than 1.0e-20: 4
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)