BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZH08FM1.SCF screened BAC_end
(1013 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1758 585 e-167
>3x_Contig1758
Length = 25930
Score = 585 bits (295), Expect = e-167
Identities = 379/395 (95%), Gaps = 9/395 (2%)
Strand = Plus / Minus
Query: 87 ctcgataagattttctctggtatgagtcgtaagtacgaattggtcttgtgaatattccgg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11965 ctcgataagattttctctggtatgagtcgtaagtacgaattggtcttgtgaatattccgg 11906
Query: 147 ccagtgagatttgataacctcatatatcgttctgacagtatcatgcattgcatcgaacct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11905 ccagtgagatttgataacctcatatatcgttctgacagtatcatgcattgcatcgaacct 11846
Query: 207 tctcactagtcttttaccatcaccggatcgtacttgtattctggttgtgattccaggttt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11845 tctcactagtcttttaccatcaccggatcgtacttgtattctggttgtgattccaggttt 11786
Query: 267 gttatcaggttctgcatgttctattggtttgattgagtcgaaaagtttcatttgcgctcc 326
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct: 11785 gttatcaggttctgcatgttctattggtttgattgagtcgaagagtttccattgcgct-c 11727
Query: 327 cgtc-ggctc-tcagtttcttccgtttctttcacttgatcagatttctcatttgtttcgt 384
|||| ||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 11726 cgtcgggctcttcagtttcttcggtttcttccacttgatcagatttctcatttgtttcgt 11667
Query: 385 ccgaagtagtaggaagtctggttgccttagcgattctcgtatggcccaattcaagctgnt 444
|||| |||||||| |||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct: 11666 ccgaggtagtagg-agtctggttgcc-tagcgattctcgtatgg-ccaattcaagctg-t 11611
Query: 445 ttttccttacttaaagttgcttgggatcaatcttt 479
||||||| |||||||| ||| ||||||||||||||
Sbjct: 11610 ttttcctcacttaaag-tgc-tgggatcaatcttt 11578
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8484
Number of Sequences: 1807
Number of extensions: 8484
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 1013
length of database: 10,358,551
effective HSP length: 16
effective length of query: 997
effective length of database: 10,329,639
effective search space: 10298650083
effective search space used: 10298650083
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)