BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZH08RM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1638 1227 0.0
>3x_Contig1638
Length = 14042
Score = 1227 bits (619), Expect = 0.0
Identities = 695/715 (97%), Gaps = 5/715 (0%)
Strand = Plus / Plus
Query: 51 atgaacaagtctctcatctagtgacagagtctgaaaagacgccgaatcatccgtagcgtt 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12106 atgaacaagtctctcatctagtgacagagtctgaaaagacgccgaatcatccgtagcgtt 12165
Query: 111 atccatgggagatatacacacgcgatacagctggcagcaccctgtgttgactcactgacc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12166 atccatgggagatatacacacgcgatacagctggcagcaccctgtgttgactcactgacc 12225
Query: 171 gtctattttattcatgttgtctcgtctgtttgtttgtttactggttgattttgattgttt 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12226 gtctattttattcatgttgtctcgtctgtttgtttgtttactggttgattttgattgttt 12285
Query: 231 ttgtttacagaaacgattgatttcaagtcatgtgatatatcacgtgactttgttgatatg 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12286 ttgtttacagaaacgattgatttcaagtcatgtgatatatcacgtgactttgttgatatg 12345
Query: 291 ctttggatcgggtttgcagaaacctgaataatgggagggtaggatctattatacacgtac 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12346 ctttggatcgggtttgcagaaacctgaataatgggagggtaggatctattatacacgtac 12405
Query: 351 acgcccctccaatcactcaatcggcgctgatgcgtgttggttgaacattatacagtcaat 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12406 acgcccctccaatcactcaatcggcgctgatgcgtgttggttgaacattatacagtcaat 12465
Query: 411 tcaagccattcaaaacaccgttacacgagtgttggcgcttccacctgcttacaaatggac 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12466 tcaagccattcaaaacaccgttacacgagtgttggcgcttccacctgcttacaaatggac 12525
Query: 471 gggttctagctgattccagctctcgattcctgattagcaagcaaaaatttgtcaaaaact 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12526 gggttctagctgattccagctctcgattcctgattagcaagcaaaaatttgtcaaaaact 12585
Query: 531 cgatatttaaccaacattattatatanaggaaagtagatacattttaaagttatttagnt 590
|||||||||||||||||||||||||| ||||| |||||||||| || ||||||||| |
Sbjct: 12586 cgatatttaaccaacattattatataaaggaagtaagatacatttaaaggttatttagtt 12645
Query: 591 gtctcttcgattgattatcggattatctgataactttctattctcatcnaataa-gtaca 649
||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| |||||
Sbjct: 12646 gtctcttcgattgattatcggataatctgataactttctatcctcatcaaataaggtaca 12705
Query: 650 atttatc-ttactatcccctncattttcatatattatggttcgctcaacttactttcgca 708
||||||| |||||||||||| || |||||||||| |||| ||||||||||||||| ||||
Sbjct: 12706 atttatctttactatcccctccaatttcatatataatgg-tcgctcaacttacttccgca 12764
Query: 709 ttcgaattcg-aaaggctttgactgacgacaagtttggtcgtcgtcgacttcttt 762
| |||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 12765 tccgaattcgaaaaggctttgactgacgacaag-ttggtcgtcgtcgacttcttt 12818
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7421
Number of Sequences: 1807
Number of extensions: 7421
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)