BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZH11RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1713 954 0.0
>3x_Contig1713
Length = 18539
Score = 954 bits (481), Expect = 0.0
Identities = 567/589 (96%), Gaps = 5/589 (0%)
Strand = Plus / Minus
Query: 48 tttgattacgatcgtttgaaaccacttgggngttcagggctttcttacaaaacactaaat 107
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 8875 tttgattacgatcgtttgaaaccacttggg-gttcagg-ctttcttacaaaacactaaat 8818
Query: 108 tgatcgatcccactgtttctgatccaatagtcgatatcgatgaacattgtgtttccaaca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8817 tgatcgatcccactgtttctgatccaatagtcgatatcgatgaacattgtgtttccaaca 8758
Query: 168 atagtccattttcgcccgggttcatgtccatcaagactctaaattggtcaagaccagaag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8757 atagtccattttcgcccgggttcatgtccatcaagactctaaattggtcaagaccagaag 8698
Query: 228 tgtacaatttgcaagccagatccgtgttatacaccaacccttctgctcaaccgctttcgg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8697 tgtacaatttgcaagccagatccgtgttatacaccaacccttctgctcaaccgctttcgg 8638
Query: 288 tcactttccttaacaatcaaagttctttgcaagttccagtaacatcggctaactctgtgg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8637 tcactttccttaacaatcaaagttctttgcaagttccagtaacatcggctaactctgtgg 8578
Query: 348 gtaaagaagaagaaggaagcccagatcaagattggaaaccaaattccatattgttcaatg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8577 gtaaagaagaagaaggaagcccagatcaagattggaaaccaaattccatattgttcaatg 8518
Query: 408 ggttgttacaaaaattcatcgggaagtataaaaaatcaccaaaattcgatccatttgcca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8517 ggttgttacaaaaattcatcgggaagtataaaaaatcaccaaaattcgatccatttgcca 8458
Query: 468 ttttggtctcaactatctccaaagatcaagaattttccattcaacggtgaaagacatcgt 527
|||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||
Sbjct: 8457 -tttggtctcaactatctccaaagatcaagaatttccaattcaacggtgaaggacatcgt 8399
Query: 528 cgact-ccatattagcttgaaatgaacgaattcttttttgaatttaatgcccttggaaga 586
||||| |||||| |||| ||| ||||||||| | ||||||||||||||| || ||||||
Sbjct: 8398 cgactcccatataagctcgaattgaacgaatcatcttttgaatttaatgcactaggaaga 8339
Query: 587 tataaccagttggaaggcaatgaaactaatttttctgc-catcaaaggc 634
|||||| ||||| | | ||||||| ||||| ||||||| ||||||||||
Sbjct: 8338 tataacgagttgaaggccaatgaagctaatatttctgcacatcaaaggc 8290
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7789
Number of Sequences: 1807
Number of extensions: 7789
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)