BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZH12RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1361 1067 0.0
>3x_Contig1361
Length = 8765
Score = 1067 bits (538), Expect = 0.0
Identities = 586/601 (97%), Gaps = 1/601 (0%)
Strand = Plus / Minus
Query: 48 cagtaatattttatcattgttaatatctatatggcataattctgggtttcgttctggttt 107
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 8189 cagtaatattttatcattgtaaatatctatatggcataattctgggtttcgttctggttt 8130
Query: 108 tttttgtgttatatggttgctatcagtggatgtctaataatatttgacactgacgcatga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8129 tttttgtgttatatggttgctatcagtggatgtctaataatatttgacactgacgcatga 8070
Query: 168 caggttgtcatgtacaggataaaaaaggcaaacatgaaaagagagggcatatttttacgt 227
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8069 caggttgtcatgtacaggataaaaaaggcaaacatgaaaagagagggcatatcaatacgt 8010
Query: 228 gactcattaattcataacttaccataattgccatttagttctaacaacttttgaatattt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8009 gactcattaattcataacttaccataattgccatttagttctaacaacttttgaatattt 7950
Query: 288 tcgaaaccgttgtgttctcccatactcaagagattttcagcagatatcttttcgacttct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7949 tcgaaaccgttgtgttctcccatactcaagagattttcagcagatatcttttcgacttct 7890
Query: 348 tcgttgtacaatccgcaaatttccaaaacgtctgccggtttcatcgttcttctgccatcc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7889 tcgttgtacaatccgcaaatttccaaaacgtctgccggtttcatcgttcttctgccatcc 7830
Query: 408 ttaaagacatatctagtcaatgccaaggacactaacgtagatccattattcactgtgaat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7829 ttaaagacatatctagtcaatgccaaggacactaacgtagatccattattcactgtgaat 7770
Query: 468 ttggataagatgtaaagccattttttgtcccaacatagcacattggattgaaattgatat 527
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 7769 ttggataagatgtaaagccattttttgtcccaacatagcacattggattgaatttgatat 7710
Query: 528 ttttgaagaagagcaatatcctttaaagaacangaagatgtcttagcgactggcaagtaa 587
||||||||| ||||||||||||| || |||| |||||||||| ||||||||||||||||
Sbjct: 7709 ttttgaagaggagcaatatccttaaagaaacaggaagatgtctcagcgactggcaagtaa 7650
Query: 588 ggatatctcttcgaagtaaagaaaagttttttgaattacttttgtcatcagatctgtcct 647
|||||||||||||| |||| ||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 7649 ggatatctcttcgaggtaaggaaaagtttttggaa-tacttttgtcatcagatctgtcct 7591
Query: 648 t 648
|
Sbjct: 7590 t 7590
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8825
Number of Sequences: 1807
Number of extensions: 8825
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)