BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA01FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig833 630 e-180
>3x_Contig833
Length = 3148
Score = 630 bits (318), Expect = e-180
Identities = 362/374 (96%), Gaps = 2/374 (0%)
Strand = Plus / Plus
Query: 86 tggaattctgaaccgattaactgaggattgaataaaatctctggcgctctgaatttctca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 tggaattctgaaccgattaactgaggattgaataaaatctctggcgctctgaatttctca 956
Query: 146 ttatcaagttcaatctgtttcccatctggcagtctgaacattgtttgttttccgtgcatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 ttatcaagttcaatctgtttcccatctggcagtctgaacattgtttgttttccgtgcatt 1016
Query: 206 gtgtagtttttctcttcttctttcggatccaatgctatatagcacgctttctctttgatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 gtgtagtttttctcttcttctttcggatccaatgctatatagcacgctttctctttgatg 1076
Query: 266 attcgaacgatctctctttcgctactcgaaagcaaggaaaccccagtggactttcgtata 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 attcgaacgatctctctttcgctactcgaaagcaaggaaaccccagtggactttcgtata 1136
Query: 326 ag-aacttgcaaaag-ttttgatatatcacgaccagctatatcaatccttcgtatagctg 383
|| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1137 agcaacttgcaaaagcttctgatatatcacgaccagctatatcaatccttcgtatagctg 1196
Query: 384 atggtaatgtgtaaccatcgtaaactggaacttcgtgttgacaacccttacctgaattcc 443
|||||||||||||||||||||||||||||||| ||||| |||||| | ||| |||| |
Sbjct: 1197 atggtaatgtgtaaccatcgtaaactggaactgcgtgtgaacaaccatcaccggaatcca 1256
Query: 444 atacgcttcctgtt 457
|||||| |||||||
Sbjct: 1257 atacgcatcctgtt 1270
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,422
Number of Sequences: 1807
Number of extensions: 14422
Number of successful extensions: 180
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)