BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA01RM1.SCF screened BAC_end
(894 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig456 837 0.0
3x_Contig1036 387 e-107
>3x_Contig456
Length = 1253
Score = 837 bits (422), Expect = 0.0
Identities = 526/549 (95%), Gaps = 9/549 (1%)
Strand = Plus / Minus
Query: 325 agtcatattttttgagaaagtccacgtcatttctagcaacatcatatgaagtaacaacga 384
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1253 agtcattttttttgagaaagtccacgtcatttctagcaacatcatatgaagtaacaacga 1194
Query: 385 tatcagctgttggaacttgtccctgtaaaggatatcttaccgaaggtccacctgcataaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 tatcagctgttggaacttgtccctgtaaaggatatcttaccgaaggtccacctgcataaa 1134
Query: 445 cgagaacatttagtgtaggtgagtactgttgaaattcttgttcccaatgtcctgtcaaag 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1133 cgagaacatttagtgtaggtgagtactgttgaaattcttgttcccaatgtcctgtcaaag 1074
Query: 505 aaggagggcaaatgattaaggatggaaggggacgtgttttttccgactgtgtctttttgt 564
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 aaggagggcaaatgaataaggatggaaggggacgtgttttttccgactgtgtctttttgt 1014
Query: 565 agtcttctgatctcaaatattggtcactagcaatgatgcaaattgtttgtaaagtcttac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 agtcttctgatctcaaatattggtcactagcaatgatgcaaattgtttgtaaagtcttac 954
Query: 625 ctaaacccatgtcatcacataaaataccatgcaaatgatacttgttttagaaatgct-ac 683
||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 953 ctaaacccatgtcatcacataaaataccatgcaaatgatacttgtttaag-aatgctaac 895
Query: 684 caattgacaccattcttgntgatatttcctcaaagttgcctttgatcgccactgggaagt 743
|||||||||||| ||||| ||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 894 caattgacacca-tcttgttgatatttcctcaaagttgcc-ttgatcgccact-ggaagt 838
Query: 744 ttaaatgggttgggctttgggaggaatccatcatttgctgaaagaaatctctttcttttt 803
|||||| |||| |||||| ||| | ||||||||||||||||| |||||||||||||||||
Sbjct: 837 ttaaat-ggtttggcttt-ggatggatccatcatttgctgaatgaaatctctttcttttt 780
Query: 804 ctctacctcttaataactcctcggataaaaccaacgggggctggcattaccgctttccaa 863
||||||||||||||| |||||||||| |||||||| |||||| ||| |||| ||||||
Sbjct: 779 ctctacctcttaatagctcctcggat-aaaccaacaggggct-gcaataccagcttccaa 722
Query: 864 tggcactaa 872
|||||||||
Sbjct: 721 tggcactaa 713
>3x_Contig1036
Length = 2982
Score = 387 bits (195), Expect = e-107
Identities = 210/215 (97%)
Strand = Plus / Minus
Query: 49 ctaatgccaaagcaccatcttcctgttcctttgacgatgttttactatttctcgaactgg 108
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ctaatgccaaagcaccagcttcctgttcctttgacgatgttttactatttctcgaactgg 166
Query: 109 caattggttttgcaaatctttcttggaacatcttttctgtacctaagaagccaggcatca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 caattggttttgcaaatctttcttggaacatcttttctgtacctaagaagccaggcatca 106
Query: 169 aaaagtcaaataatgaccataattcaactacattattctggataggatttttcgtcaaaa 228
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 105 aaaagtcaaataatgaccataattcaactacattattctggataggagtacccgtcaaaa 46
Query: 229 ctaatctatgattggaattgattagcttcactgcc 263
|||||||||||||||||||||||||||||||||||
Sbjct: 45 ctaatctatgattggaattgattagcttcactgcc 11
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6753
Number of Sequences: 1807
Number of extensions: 6753
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 2
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)