BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA02FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1515 1035 0.0
>3x_Contig1515
Length = 8855
Score = 1035 bits (522), Expect = 0.0
Identities = 591/608 (97%), Gaps = 6/608 (0%)
Strand = Plus / Minus
Query: 86 aagaaactgatagaagtccatgtttgacccgtattttgtgtgcaattcctgctgtaattg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6888 aagaaactgatagaagtccatgtttgacccgtattttgtgtgcaattcctgctgtaattg 6829
Query: 146 gaaaatttcaatctcatccctagtgaaacaataggctactgcggcaaatagcgaaagaaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6828 gaaaatttcaatctcatccctagtgaaacaataggctactgcggcaaatagcgaaagaaa 6769
Query: 206 aagcgcataagtaacaggtctggatgaagatagcattttccgtatatctggaccttgatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6768 aagcgcataagtaacaggtctggatgaagatagcattttccgtatatctggaccttgatg 6709
Query: 266 gattccttataaacaatttattcgatcaatttatagcttgataatgcactttttattagt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6708 gattccttataaacaatttattcgatcaatttatagcttgataatgcactttttattagt 6649
Query: 326 ttaatgctctttcatttaaacatcttggccttgagttttattttcgttcaatacatgaat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6648 ttaatgctctttcatttaaacatcttggccttgagttttattttcgttcaatacatgaat 6589
Query: 386 ttcaaaccgttctttcatataaataaacaatccagttattttcataacgggaaattcata 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6588 ttcaaaccgttctttcatataaataaacaatccagttattttcataacgggaaattcata 6529
Query: 446 aactgcgtctcatacaatactgattatgggcttgttatcaattggtattctctcagctga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6528 aactgcgtctcatacaatactgattatgggcttgttatcaattggtattctctcagctga 6469
Query: 506 tatttaatgctagtatttacttcatcagaattcattcccatata-tattcgatgaatgct 564
|||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct: 6468 tatttaatgctagtatttacttcatcagaattcatt-ccatatattatacgatgaatgct 6410
Query: 565 actagaagacaacagccaaggagcctggttgntaagctatatcaatttttccatatatc- 623
||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||
Sbjct: 6409 actagaagacaacagccaaggaggctggttgttaagctatatcagtttttccatatatca 6350
Query: 624 agcgccctccttatattgcgcttggttagttccttgggttgggttctttttccattgggc 683
|||| ||| |||||||||||||| |||||||| |||| | ||||||| ||||||||| |
Sbjct: 6349 agcg-ccttcttatattgcgctttgttagttcgttgg--ttggttcttcttccattggtc 6293
Query: 684 tcccgaaa 691
|| |||||
Sbjct: 6292 tcgcgaaa 6285
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8064
Number of Sequences: 1807
Number of extensions: 8064
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)