BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA02RM1.SCF screened BAC_end
(885 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1455 0.0
>3x_Contig1803
Length = 52241
Score = 1455 bits (734), Expect = 0.0
Identities = 821/841 (97%), Gaps = 8/841 (0%)
Strand = Plus / Minus
Query: 49 aatgacaaactaaccttgttaaagaccgatcatccaaaattcagcactgtcatattgcag 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16850 aatgacaaactaaccttgttaaagaccgatcatccaaaattcagcactgtcatattgcag 16791
Query: 109 gggctctgttcgtcgaatgtgcatcatgtgctctgccatgatgtttcttttttttcatta 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16790 gggctctgttcgtcgaatgtgcatcatgtgctctgccatgatgtttcttttttttcatta 16731
Query: 169 tatcgaggcgtgttttggtgtttaaactggaaattagggtaaaaatatgtaaaagctatt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16730 tatcgaggcgtgttttggtgtttaaactggaaattagggtaaaaatatgtaaaagctatt 16671
Query: 229 cgaaaagtcacacttttttagcagaagacgataccaccaaaaggaaatgtcgataggttg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16670 cgaaaagtcacacttttttagcagaagacgataccaccaaaaggaaatgtcgataggttg 16611
Query: 289 ttgctttacttaaaactagtttaattagtacatacaccagtttctcgcccaagttctcta 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16610 ttgctttacttaaaactagtttaattagtacatacaccagtttctcgcccaagttctcta 16551
Query: 349 catattgcgaatacaaatcttgtgctgaaagtgcgtatccctaactgctgagccttattt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16550 catattgcgaatacaaatcttgtgctgaaagtgcgtatccctaactgctgagccttattt 16491
Query: 409 ctcatattaaagtcatcggtaactagactgacaaaattaaatctctgagtactttgtcca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16490 ctcatattaaagtcatcggtaactagactgacaaaattaaatctctgagtactttgtcca 16431
Query: 469 tcttcagatagaggtatgcagtccttacctttttctattgcatcattgtttaaaacatta 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16430 tcttcagatagaggtatgcagtccttacctttttctattgcatcattgtttaaaacatta 16371
Query: 529 aacttatcttgtgctttggctatggcatcaatgacaaactcgtcaacatgggatttccac 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16370 aacttatcttgtgctttggctatggcatcaatgacaaactcgtcaacatgggatttccac 16311
Query: 589 gtcatctgctcttcgatctccaagtgctcttcaagatgccctgctacattacccgntaat 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 16310 gtcatctgctcttcgatctccaagtgctcttcaagatgccctgctacattacccgtaaat 16251
Query: 649 ctttaggcaagtagtttacgctcgtaatatagctgcctaaacagc-atcactgctctagt 707
||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 16250 cttagggcaagtagtttacgctcgtaatatagctgcct-aacagcaatcactgctctagt 16192
Query: 708 tgcagcttcgagcacactttcatcttttgatttacggagaaatctc-attcttggaaggt 766
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 16191 tgcagcttcgagcacactttcatcttttgatttacggagaaatctcaattcttggaaggt 16132
Query: 767 agtcaaacatatggcannattcaaaacattacttgtgggccagcttngtaatatgagcaa 826
|||||||||||||||| ||||||||| ||||||| ||||||||| ||||||||| |
Sbjct: 16131 agtcaaacatatggcaaatttcaaaacactacttgt-ggccagcttgtaaatatgagc-a 16074
Query: 827 aaatgcctc-accaagtggttgcatctagcac-nagaatgtcacattggttgtcagcttg 884
||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 16073 aaatgcctcaaccaagtggttgcatctagcacaaagaatgtcacattgg-tgtcagcttg 16015
Query: 885 a 885
|
Sbjct: 16014 a 16014
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5756
Number of Sequences: 1807
Number of extensions: 5756
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 885
length of database: 10,358,551
effective HSP length: 16
effective length of query: 869
effective length of database: 10,329,639
effective search space: 8976456291
effective search space used: 8976456291
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)