BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA03FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1660 1031 0.0
>3x_Contig1660
Length = 13166
Score = 1031 bits (520), Expect = 0.0
Identities = 569/580 (98%), Gaps = 4/580 (0%)
Strand = Plus / Minus
Query: 87 tgctatcacagtatctctgtacatcgccaagatcttgccacgacgcgatttcatgtagtc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11052 tgctatcacagtatctctgtacatcgccaagatcttgccacgacgcgatttcatgtagtc 10993
Query: 147 tactttactcgagttattagtggttgtgctagtagaggctgcaggtgtgctgagaacact 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10992 tactttactcgagttattagtggttgtgctagtagaggctgcaggtgtgctgagaacact 10933
Query: 207 gtgagttgtcgctccagcagcaccagcaccattgctgatagcactcgtgctgctgctgct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10932 gtgagttgtcgctccagcagcaccagcaccattgctgatagcactcgtgctgctgctgct 10873
Query: 267 gctgctgctgttgcttttgtttccattgctccctgtatgagatactttccccaccttgcc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10872 gctgctgctgttgcttttgtttccattgctccctgtatgagatactttccccaccttgcc 10813
Query: 327 ccgtttcaactctttctcattcttggctagtttccccaccaaatcccgttggcatcgctc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10812 ccgtttcaactctttctcattcttggctagtttccccaccaaatcccgttggcatcgctc 10753
Query: 387 gtacacgtccattatcttgttttgtatctcgttgatttgtaaatgataaaacgttatctg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10752 gtacacgtccattatcttgttttgtatctcgttgatttgtaaatgataaaacgttatctg 10693
Query: 447 tccatcgttcaaacttgtctggttcgggaacatctcttttatcatatccagaatttcgtt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10692 tccatcgttcaaacttgtctggttcgggaacatctcttttatcatatccagaatttcgtt 10633
Query: 507 gatcttgatatcttccatgcgagtaanacttgtgtatcttatgatcgttgaacccagttc 566
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 10632 gatcttgatatcttccatgcgagtaa-acttgtgtatcttatgatcgttgaacccagttc 10574
Query: 567 gtaatctaatcaacgatactttattcgtttgggaattcaat-actcattgt-ttatacat 624
||||||||||||||||||||||||||||||| ||||||||| |||||| || | ||||||
Sbjct: 10573 gtaatctaatcaacgatactttattcgtttgtgaattcaataactcatcgtataatacat 10514
Query: 625 ccagcagc-aaaactttttgaacatgttttaatgggggca 663
|||||||| |||||| |||||||||| |||| ||| ||||
Sbjct: 10513 ccagcagcaaaaactctttgaacatggtttagtggtggca 10474
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,108
Number of Sequences: 1807
Number of extensions: 14108
Number of successful extensions: 489
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)