BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA03RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1802 1631 0.0
>3x_Contig1802
Length = 45229
Score = 1631 bits (823), Expect = 0.0
Identities = 865/873 (99%), Gaps = 5/873 (0%)
Strand = Plus / Minus
Query: 47 cggtttggtaagtagcatcgtaattatagcatccttttcctgaaggtaccattggataat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21628 cggtttggtaagtagcatcgtaattatagcatccttttcctgaaggtaccattggataat 21569
Query: 107 gataataagcgacttcaaaacctgaagagggagaattcttggaaggcttacaaccgagaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21568 gataataagcgacttcaaaacctgaagagggagaattcttggaaggcttacaaccgagaa 21509
Query: 167 tggtcccaccatcagtattctgtgactctgcattactgaaaggtagtaaaaacagcaata 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21508 tggtcccaccatcagtattctgtgactctgcattactgaaaggtagtaaaaacagcaata 21449
Query: 227 gcaaagaaaaacctttcgtcagcatcatacaatataattgaagactttctggttttatct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21448 gcaaagaaaaacctttcgtcagcatcatacaatataattgaagactttctggttttatct 21389
Query: 287 tattttactgtcagttaaagcgaaggatgtagtttttagtttatgtttcagaactgcgag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21388 tattttactgtcagttaaagcgaaggatgtagtttttagtttatgtttcagaactgcgag 21329
Query: 347 tcaaatggaatttaagcgatgttacatgaaataaagcctaacatagatctgaggtacaga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21328 tcaaatggaatttaagcgatgttacatgaaataaagcctaacatagatctgaggtacaga 21269
Query: 407 ccaaaaaatcatgttatacttatatggaaaacggtcacagacctattagacggttgatca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21268 ccaaaaaatcatgttatacttatatggaaaacggtcacagacctattagacggttgatca 21209
Query: 467 tcaaagttcaacgaaatactcgaaaataacccttgacattttaccatccaatggacattg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21208 tcaaagttcaacgaaatactcgaaaataacccttgacattttaccatccaatggacattg 21149
Query: 527 agagatagagatgatacaattgtgtataccaatttcctctcaaaatggagattatagcac 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21148 agagatagagatgatacaattgtgtataccaatttcctctcaaaatggagattatagcac 21089
Query: 587 cattgcaaattcaacaaagacttatggtttcaaaaaccacacatgacatgagcagtatgt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21088 cattgcaaattcaacaaagacttatggtttcaaaaaccacacatgacatgagcagtatgt 21029
Query: 647 ctcgaataaaccgatgcaggagtctttttttttttgcgaacatcttctacagagagtcaa 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21028 ctcgaataaaccgatgcaggagtctttttttttttgcgaacatcttctacagagagtcaa 20969
Query: 707 tctgttgatttgcaaacattctcgtccttatacttctaataagtggagagattagacaat 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20968 tctgttgatttgcaaacattctcgtccttatacttctaataagtggagagattagacaat 20909
Query: 767 atttctctcgtattccctcac-accaatatatttaccaaaaagatgtgaaaaaatctaga 825
|||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 20908 atttctctcgta-tccctcacaaccaatatatttaccaaaaagatgtg-aaaaatctaga 20851
Query: 826 gacttncaaaaataaaaatcgattctcataccgaaatagcgaatatcatgccataaatct 885
||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 20850 gactttcaaaaataaaaatcgattctcataccgaaatagcgaatatcatg-catagatct 20792
Query: 886 actatgatgccagtgnactttgntagcgttgaa 918
||||||||||||||| |||||| ||||||||||
Sbjct: 20791 actatgatgccagtg-actttgttagcgttgaa 20760
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,500
Number of Sequences: 1807
Number of extensions: 12500
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)