BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA04FM1.SCF screened BAC_end
(995 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1602 753 0.0
>3x_Contig1602
Length = 12694
Score = 753 bits (380), Expect = 0.0
Identities = 415/422 (98%), Gaps = 5/422 (1%)
Strand = Plus / Minus
Query: 86 cggcagcactacacgatcatcagtcgctgtaacgttagtcgtggtatcaaagagctcatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10859 cggcagcactacacgatcatcagtcgctgtaacgttagtcgtggtatcaaagagctcatt 10800
Query: 146 tctcgaaacaactctcaaaccagacatgattgatttgttgagctttgcaaggtgttcctg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10799 tctcgaaacaactctcaaaccagacatgattgatttgttgagctttgcaaggtgttcctg 10740
Query: 206 agatgatgatgaaaagatacgcagattacatctcatctcctcgtatcgtcatattttgac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10739 agatgatgatgaaaagatacgcagattacatctcatctcctcgtatcgtcatattttgac 10680
Query: 266 taactttttgatcttatatatacatgtatattttttttagcatattggcaataggtgtaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10679 taactttttgatcttatatatacatgtatattttttttagcatattggcaataggtgtaa 10620
Query: 326 gatgacagacagtcgaaagtagccacagatagtttgtaatgacaaacatgtattcttatg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10619 gatgacagacagtcgaaagtagccacagatagtttgtaatgacaaacatgtattcttatg 10560
Query: 386 ttatacatatcacttgtgtaaggttgtgtgcaaagtaagattttgctattttcatggttt 445
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 10559 ttatacatatcacttgtgtaaggttgtgtgcaaagtaagattttgcta-tttcatggttt 10501
Query: 446 caatatctacataaaaaatgntattgtacgcaactttggaaagcacctttttaaacttac 505
|||||||||||||||||||| || |||||||||||| | ||||||| ||||||||||||
Sbjct: 10500 caatatctacataaaaaatggta-tgtacgcaactt--ggaagcacc-ttttaaacttac 10445
Query: 506 tt 507
||
Sbjct: 10444 tt 10443
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,554
Number of Sequences: 1807
Number of extensions: 10554
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 995
length of database: 10,358,551
effective HSP length: 16
effective length of query: 979
effective length of database: 10,329,639
effective search space: 10112716581
effective search space used: 10112716581
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)