BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA04RM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig687 1415 0.0
>3x_Contig687
Length = 2400
Score = 1415 bits (714), Expect = 0.0
Identities = 814/833 (97%), Gaps = 11/833 (1%)
Strand = Plus / Plus
Query: 48 tgtatagacttggagattt-agaaaca-ggagtccctcaacagtatctaagtagaatgcc 105
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 881 tgtatagacttggagatttcagaaacaaggagtccctcaacagtatctaagtagaatgcc 940
Query: 106 aatcttccttgaagctcttcatagctgtcatttctaactttatcatcatcatttagtagt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 aatcttccttgaagctcttcatagctgtcatttctaactttatcatcatcatttagtagt 1000
Query: 166 tgattggcatcaaactcaaaatctcgtagaagcattcgaaagaaattggggtgatctaat 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 tgattggcatcaaactcaaaatctcgtagaagcattcgaaagaaattggggtgatctaat 1060
Query: 226 ttgaactccttatcaaaatagaattcaggtatttcttcaaatgccttggctttcgtattt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 ttgaactccttatcaaaatagaattcaggtatttcttcaaatgccttggctttcgtattt 1120
Query: 286 tgcaatccaagggcagttttatcatgatcaatagatctcatttgctccattcggttcaac 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1121 tgcaatccaagggcagttttatcatgatcaatagatctcatttgctccattcggttcaac 1180
Query: 346 tttgatatattatttgtcgattgatacaccctatattcgtctttaatgtcatctctgtat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1181 tttgatatattatttgtcgattgatacaccctatattcgtctttaatgtcatctctgtat 1240
Query: 406 tgattaatatccttgtcccatttatccttaatatcgttcttgcttagaactacaggggga 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1241 tgattaatatccttgtcccatttatccttaatatcgttcttgcttagaactacaggggga 1300
Query: 466 atatcctcggtggttgggtgccgcaaccatcttttaaatctggtgttcatcacaatttca 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1301 atatcctcggtggttgggtgccgcaaccatcttttaaatctggtgttcatcacaatttca 1360
Query: 526 tatattgaattatcaaccaacggtgaataatcaagaccgtgtttttgggtatgcatcgtt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1361 tatattgaattatcaaccaacggtgaataatcaagaccgtgtttttgggtatgcatcgtt 1420
Query: 586 gtagaaaaagaattgaatgtggaatcaaaactactacgcctcatagacatactgtccttt 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1421 gtagaaaaagaattgaatgtggaatcaaaactactacgcctcatagacatactgtccctt 1480
Query: 646 atttgatccctgtttctagat-atacagatagatcatcgttcaacgagctagcatcatct 704
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1481 atttgatccctgtttctagataatacagatagatcatcgttcaacgagctagcatcatct 1540
Query: 705 tgagcatgactgggcaccaatagtggnagatcgacttaaattgcgtcctactatcangag 764
||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||
Sbjct: 1541 gaggcatgactgggcaccaatagtgg-agatcgactt-aattgcgtcctactatcaggag 1598
Query: 765 ttagagatagagctggtgtctcactttccaataacctattcgggcatagttaacttcgct 824
|||||||||||||||||||||||||| ||| ||||||| || |||||||||||| |||||
Sbjct: 1599 ttagagatagagctggtgtctcacttcccagtaaccta-tccggcatagttaac-tcgct 1656
Query: 825 ggtttataagtctggttggaacagctttttnctttgctatgccatcttaaagg 877
||||||| ||||| |||||||||||||||| |||||||||| |||||||||||
Sbjct: 1657 ggtttat-agtct-gttggaacagcttttt-ctttgctatg-catcttaaagg 1705
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6628
Number of Sequences: 1807
Number of extensions: 6628
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)