BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA05RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1528 1592 0.0
>3x_Contig1528
Length = 10737
Score = 1592 bits (803), Expect = 0.0
Identities = 854/867 (98%), Gaps = 4/867 (0%)
Strand = Plus / Plus
Query: 48 atcaaacctgatagtgctgatgatatcaaggaaaaagcgtcaaagctgggtattggtcac 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2124 atcaaacctgatagtgctgatgatatcaaggaaaaagcgtcaaagctgggtattg-tcac 2182
Query: 108 attagccgaagaagactacaaggaaattaaaaagcctttgactcgcgagctactggaagc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2183 attagccgaagaagactacaaggaaattaaaaagcctttgactcgcgagctactggaagc 2242
Query: 168 aagggccaaagaactagaactcgtcacgctaccagttttagaatacagtgccctcaaaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2243 aagggccaaagaactagaactcgtcacgctaccagttttagaatacagtgccctcaaaaa 2302
Query: 228 accgttgacagttacagacataaaacagaaatgtgaagattggggtttagttcctataga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2303 accgttgacagttacagacataaaacagaaatgtgaagattggggtttagttcctataga 2362
Query: 288 aaaagacatatatgaagaccttttgaacaagttcaacgatgactctgtcagtgaatgggc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2363 aaaagacatatatgaagaccttttgaacaagttcaacgatgactctgtcagtgaatgggc 2422
Query: 348 gaaagaacatgggaaagttattgtctcgaaagacgaatatgaccatctgttggaagtcga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2423 gaaagaacatgggaaagttattgtctcgaaagacgaatatgaccatctgttggaagtcga 2482
Query: 408 ggatcaagcggcttctgttgcaatgactagggatgagttgatagaaagagcccatgagct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2483 ggatcaagcggcttctgttgcaatgactagggatgagttgatagaaagagcccatgagct 2542
Query: 468 caacattataccgattgatgctgacaaatttgaagaaatacaacgcgaattagcttcctc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2543 caacattataccgattgatgctgacaaatttgaagaaatacaacgcgaattagcttcctc 2602
Query: 528 cggcagaaacagtatgacggaggacgacgttgttttgaaagctaaagaattaggatttgt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2603 cggcagaaacagtatgacggaggacgacgttgttttgaaagctaaagaattaggatttgt 2662
Query: 588 gcctatcccagtgtcccagtatgatccaaataccgcgattggtatttctaaagacgatct 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2663 gcctatcccagtgtcccagtatgatccaaataccgcgattggtatttctaaagacgatct 2722
Query: 648 catgatacgcgcacgagatcttggtcttgttcccattcctattgagcagtttgaacagat 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2723 catgatacgcgcacgagatcttggtcttgttcccattcctattgagcagtttgaacagat 2782
Query: 708 taagaaagaaatggagacgccaaccttgaccagngaacaaatagttgagcatgccgctga 767
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2783 taagaaagaattggagacgccaaccttgaccagggaacaaatagttgagcatgccgctga 2842
Query: 768 tttcaatttgatagctttagatttaacgga-tacaaacgtttgaagaaggggttcgta-t 825
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
Sbjct: 2843 tttcaatttgatagctttagatttaacggagtacaaacgtttgaagaa-gggttcgtatt 2901
Query: 826 tgatggataacgacaatgacactgattctgnanaagatgaagaggaagaaagagacgcan 885
|||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||
Sbjct: 2902 tgatggataacgacaatgacactgattctgaagaagatgaagaggaagaagaagacgcag 2961
Query: 886 aggtcgttgactctgagaataaacaat 912
|||||||||||||||||| |||||||
Sbjct: 2962 aggtcgttgactctgagataaaacaat 2988
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6616
Number of Sequences: 1807
Number of extensions: 6616
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)