BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA06FM1.SCF screened BAC_end
(868 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1715 488 e-137
>3x_Contig1715
Length = 16241
Score = 488 bits (246), Expect = e-137
Identities = 328/348 (94%), Gaps = 6/348 (1%)
Strand = Plus / Minus
Query: 87 tgttgaaacaagaattcatcgccaaatatataccgaaagaatttgatatttcaaaggata 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1490 tgttgaaacaagaattcatcgccaaatatataccgaaagaatttgatatttcaaaggata 1431
Query: 147 agatatttgtcacttctacctctttcacaccggacgaagatatctcagtattaatcggat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1430 agatatttgtcacttctacctctttcacaccggacgaagatatctcagtattaatcggat 1371
Query: 207 ccttcaagatatatgaaaattcattccaaaagtttgatcagactttgcctcgaatcttgt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1370 ccttcaagatatatgaaaattcattccaaaagtttgatcagactttgcctcgaatcttgt 1311
Query: 267 gtttcatcactgggaagggcccattgcaag-aaagattgt-aaacaggtacaggatttca 324
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 1310 gtttcatcactgggaagggcccattgcaagaaaagattgtaaaacaggtacaggatttca 1251
Query: 325 aat-ggaccgcgtnncagtcgaattc-tatggctatcatcagaagataatcctagcctat 382
||| ||||||||| ||||||||| |||||||||||||||||||| |||||| ||||
Sbjct: 1250 aatgggaccgcgtccaggtcgaattcttatggctatcatcagaagattatcctaagctat 1191
Query: 383 t-agggtgggtgactattgggggtttgttacatacctcaagcttgggg 429
| ||| || ||||||| ||||| | ||||||||| ||||||| ||||
Sbjct: 1190 taaggttgtgtgacta-tggggtatcgttacatacttcaagctcgggg 1144
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 40,561
Number of Sequences: 1807
Number of extensions: 40561
Number of successful extensions: 5237
Number of sequences better than 1.0e-20: 1
length of query: 868
length of database: 10,358,551
effective HSP length: 16
effective length of query: 852
effective length of database: 10,329,639
effective search space: 8800852428
effective search space used: 8800852428
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)