BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA06RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig922 674 0.0
3x_Contig1446 168 1e-41
3x_Contig1396 159 1e-38
3x_Contig631 159 1e-38
3x_Contig904 155 2e-37
3x_Contig1498 145 2e-34
>3x_Contig922
Length = 4170
Score = 674 bits (340), Expect = 0.0
Identities = 381/388 (98%), Gaps = 5/388 (1%)
Strand = Plus / Plus
Query: 48 tctctccagagaaaactactgcaatcattcggtgaagatctttcagagatagacgccaaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 tctctccagagaaaactactgcaatcattcggtgaagatctttcagagatagacgccaaa 1014
Query: 108 ctagaattgcttaactgtcatcccttaatttttgaaatatagatcacctcaacgattatc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 ctagaattgcttaactgtcatcccttaatttttgaaatatagatcacctcaacgattatc 1074
Query: 168 aaatcttatatccaatataagatattagcatatgctagataagaatatatattaccatcc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 aaatcttatatccaatataagatattagcatatgctagataagaatatatattaccatcc 1134
Query: 228 tgcattttaatccattacatgacgtccggagatacgtagatccatgtataaggaatagcc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1135 tgcattttaatccattacatgacgtccggagatacgtagatccatgtataaggaatagcc 1194
Query: 288 tcatatgtgatggctctatcaggttatagtgcacatctaattgtcatattaacaacaaca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1195 tcatatgtgatggctctatcaggttatagtgcacatctaattgtcatattaacaacaaca 1254
Query: 348 tgactccgt-ggccaagct-ggttaaggcgtg-cg-actgttaatcgcaagatcgag-ag 402
||||||||| ||||||||| ||||| |||||| || ||||||||||||||||||||| ||
Sbjct: 1255 tgactccgtgggccaagctgggttagggcgtgacgcactgttaatcgcaagatcgagaag 1314
Query: 403 ttcaatcctctccggggtcgtttatttt 430
||||||||||||||||||||||| ||||
Sbjct: 1315 ttcaatcctctccggggtcgtttttttt 1342
>3x_Contig1446
Length = 10598
Score = 168 bits (85), Expect = 1e-41
Identities = 88/89 (98%)
Strand = Plus / Minus
Query: 344 aacatgactccgtggccaagctggttaaggcgtgcgactgttaatcgcaagatcgagagt 403
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2545 aacacgactccgtggccaagctggttaaggcgtgcgactgttaatcgcaagatcgagagt 2486
Query: 404 tcaatcctctccggggtcgtttatttttt 432
|||||||||||||||||||||||||||||
Sbjct: 2485 tcaatcctctccggggtcgtttatttttt 2457
>3x_Contig1396
Length = 8488
Score = 159 bits (80), Expect = 1e-38
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 349 gactccgtggccaagctggttaaggcgtgcgactgttaatcgcaagatcgagagttcaat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7779 gactccgtggccaagctggttaaggcgtgcgactgttaatcgcaagatcgagagttcaat 7838
Query: 409 cctctccggggtcgtttatttttt 432
||||||||||||||||| ||||||
Sbjct: 7839 cctctccggggtcgtttttttttt 7862
>3x_Contig631
Length = 2339
Score = 159 bits (80), Expect = 1e-38
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 349 gactccgtggccaagctggttaaggcgtgcgactgttaatcgcaagatcgagagttcaat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1451 gactccgtggccaagctggttaaggcgtgcgactgttaatcgcaagatcgagagttcaat 1510
Query: 409 cctctccggggtcgtttatttttt 432
|||||||||||||||||| |||||
Sbjct: 1511 cctctccggggtcgtttaattttt 1534
>3x_Contig904
Length = 3319
Score = 155 bits (78), Expect = 2e-37
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 348 tgactccgtggccaagctggttaaggcgtgcgactgttaatcgcaagatcgagagttcaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1710 tgactccgtggccaagctggttaaggcgtgcgactgttaatcgcaagatcgagagttcaa 1651
Query: 408 tcctctccggggtcgttt 425
||||||||||||||||||
Sbjct: 1650 tcctctccggggtcgttt 1633
>3x_Contig1498
Length = 12634
Score = 145 bits (73), Expect = 2e-34
Identities = 136/152 (89%), Gaps = 4/152 (2%)
Strand = Plus / Minus
Query: 705 ggctaactttttgaacccnaacgatctagcgtcactcttgcttggttagtcgccgcttca 764
||||||||||||||||| ||||||||||||||||||| || ||| |||||||||||||
Sbjct: 12629 ggctaactttttgaaccagaacgatctagcgtcactctgtct-ggtaagtcgccgcttca 12571
Query: 765 atgagttggcgactcctcgactatacgctgat-ttaccattaattagaatcca-ttttgc 822
|||||||||||||||||||||||||||||||| | || |||||| |||||||| | ||||
Sbjct: 12570 atgagttggcgactcctcgactatacgctgatatcacaattaataagaatccagtattgc 12511
Query: 823 gctc-aaagactggtgaattgatggtgggaaa 853
|||| ||||||||||| ||||| ||||||||
Sbjct: 12510 gctcgaaagactggtggattgagtgtgggaaa 12479
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,229
Number of Sequences: 1807
Number of extensions: 11229
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 6
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)