BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA07FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1519 1011 0.0
>3x_Contig1519
Length = 9351
Score = 1011 bits (510), Expect = 0.0
Identities = 633/658 (96%), Gaps = 12/658 (1%)
Strand = Plus / Minus
Query: 86 ctacaaatttatttttgttatcaatctgatatcaaatcgaaaacaaaaacagaaaaaaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4785 ctacaaatttatttttgttatcaatctgatatcaaatcgaaaacaaaaacagaaaaaaag 4726
Query: 146 gttccccgtcaaccaacctgtcgcaaaggaatgcttgcggaaaaaagtttgggaaacgtc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4725 gttccccgtcaaccaacctgtcgcaaaggaatgcttgcggaaaaaagtttgggaaacgtc 4666
Query: 206 agttcagctcaattcgctgtacattaatggttgctaactgccaaacatcagaatattgtg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4665 agttcagctcaattcgctgtacattaatggttgctaactgccaaacatcagaatattgtg 4606
Query: 266 tcttcgtgattcatgtacctgtagaggcgattttccaaaaaagggaataaattgccgagg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4605 tcttcgtgattcatgtacctgtagaggcgattttccaaaaaagggaataaattgccgagg 4546
Query: 326 taaacttccctaggcatactttttcgtgtagtcacgtgtgttttaatatctgacgcacgt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4545 taaacttccctaggcatactttttcgtgtagtcacgtgtgttttaatatctgacgcacgt 4486
Query: 386 cagtgctattaataatttaaataagtaatatatgaatacgaagatgatgcaccagatata 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4485 cagtgctattaataatttaaataagtaatatatgaatacgaagatgatgcaccagatata 4426
Query: 446 ctaactcattgtgaaagcatgaaatcgaaaatacttcccatattgacgtatgcccgacca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4425 ctaactcattgtgaaagcatgaaatcgaaaatacttcccatattgacgtatgcccgacca 4366
Query: 506 caatcgctaaagtatttttcaactacttgcttttgaaacttcaaaga-tagcctattttg 564
|||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||| ||
Sbjct: 4365 caatcgctaaggtatttttcaactacttgc-tttgaaacttcaaagagtagcctattctg 4307
Query: 565 ttcaacaagtgcttgggacttccgagtgaggacagggattttttctgggtgcgttactat 624
|||| ||||||||| |||||||||||||| ||||| || ||||||| |||||||||||||
Sbjct: 4306 ttcagcaagtgctt-ggacttccgagtga-gacagtga-tttttct-ggtgcgttactat 4251
Query: 625 caccaagagtggtaaagtggctttaatgtttggaagctttgttttcttgcaaatcaaaca 684
|||| |||||||||||||||||| | ||||||| ||| ||||||| |||||||||||||
Sbjct: 4250 cacc-agagtggtaaagtggcttcagtgtttgg-agc-ttgtttttctgcaaatcaaaca 4194
Query: 685 aagattggaagttccagcttttgattgtaaagattgttggtccgaaatacttgtaact 742
|||||||||| | |||| ||||||||||||| ||||| || || |||||||||||||
Sbjct: 4193 gagattggaag-tacagcatttgattgtaaag-ttgtttgt-cggaatacttgtaact 4139
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8482
Number of Sequences: 1807
Number of extensions: 8482
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)