BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA07RM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1669 1324 0.0
>3x_Contig1669
Length = 15503
Score = 1324 bits (668), Expect = 0.0
Identities = 739/755 (97%), Gaps = 6/755 (0%)
Strand = Plus / Minus
Query: 47 cgatgtagttcgattccattatagagctatcgttagatttttctaagtcatcatgataag 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9417 cgatgtagttcgattccattatagagctatcgttagatttttctaagtcatcatgataag 9358
Query: 107 tatacggtaacttgaaaggccaatgaccagatctttgaaaatactctagagcaaccatga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9357 tatacggtaacttgaaaggccaatgaccagatctttgaaaatactctagagcaaccatga 9298
Query: 167 ttacgtatcctagaccttgccatgccgcacaagaaataaacaacggttttaaattggtcg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9297 ttacgtatcctagaccttgccatgccgcacaagaaataaacaacggttttaaattggtcg 9238
Query: 227 caccaatatgggatatataaaccgggaactggtctgtatgcatgaaccaataaatgggat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9237 caccaatatgggatatataaaccgggaactggtctgtatgcatgaaccaataaatgggat 9178
Query: 287 gaccttgtcctgcccaacatgccaacatcgcaattagcatcccataccatggaatgaaag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9177 gaccttgtcctgcccaacatgccaacatcgcaattagcatcccataccatggaatgaaag 9118
Query: 347 ctatccagggaaagataaaccagtagttacctggacgtggaaacatattagtatagtctt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9117 ctatccagggaaagataaaccagtagttacctggacgtggaaacatattagtatagtctt 9058
Query: 407 gcggtttacgtttatacctgtatcaaatccaatccttatgagaatgtctaccagtgatat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9057 gcggtttacgtttatacctgtatcaaatccaatccttatgagaatgtctaccagtgatat 8998
Query: 467 tctttaaaggaatgagctatgttgaccttgtcccgtcaaattcggctggtataatatact 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8997 tctttaaaggaatgagctatgttgaccttgtcccgtcaaattcggctggtataatatact 8938
Query: 527 cattcttttccttatatatctaaaacccgacttccacgaataaaaaacaatataaactat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8937 cattcttttccttatatatctaaaacccgacttccacgaataaaaaacaatataaactat 8878
Query: 587 atttgacatatttatatatatatgctnttatatggcatgggcttgtgtatggcactgcag 646
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 8877 atttgacatatttatatatatatgcttttatatggcat-ggcttgtgtatggcactgcag 8819
Query: 647 tgatgctggcactgatgctttaaattac-acttgctattcactgaaagtaactgtcaatc 705
|||||||| ||||||||| ||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 8818 tgatgctgtcactgatgccttaaattacaacttgctattcactgaatgtaactgtcaatc 8759
Query: 706 ggcttgatgataccctagcttggagacaccctgcgcggatttttgggcggctttgttgcg 765
|||| |||||||| ||||||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct: 8758 ggctcgatgatacactagctt-gagacaccctgcgc-gatttctgggc-gctttgttgcg 8702
Query: 766 aaattttgttccaataaaaaaaaaaggttttcttt 800
| | |||| |||| |||||||||||||||||||||
Sbjct: 8701 ata-tttgctccagtaaaaaaaaaaggttttcttt 8668
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9611
Number of Sequences: 1807
Number of extensions: 9611
Number of successful extensions: 111
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)