BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA09FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig301 1247 0.0
>3x_Contig301
Length = 1492
Score = 1247 bits (629), Expect = 0.0
Identities = 771/803 (96%), Gaps = 12/803 (1%)
Strand = Plus / Minus
Query: 88 cctttttcaaaaactctcttcaaatctactttaactttggaaagcgtttgaccttgtgac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 cctttttcaaaaactctcttcaaatctactttaactttggaaagcgtttgaccttgtgac 896
Query: 148 ttatgaatcgatagtgaccacgccaaaatcaatggtaattgagttcttgagaccaatgga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 ttatgaatcgatagtgaccacgccaaaatcaatggtaattgagttcttgagaccaatgga 836
Query: 208 acatccttttcatcctccatcgcccaagtctctggtcgaacgagaacaatcctggcgtcg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 acatccttttcatcctccatcgcccaagtctctggtcgaacgagaacaatcctggcgtcg 776
Query: 268 ccagaaggagtgaagaattgaactaagggcaatttcgctcctcttgccttcttgtgtaaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ccagaaggagtgaagaattgaactaagggcaatttcgctcctcttgccttcttgtgtaaa 716
Query: 328 ttccgtacaatttctttcttccgttccacattggcctttatacgactactcatggaatct 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ttccgtacaatttctttcttccgttccacattggcctttatacgactactcatggaatct 656
Query: 388 gtctccgttatgaaaaagtcgaatattgtctcactgagtggagattcaatttgaatgcgc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gtctccgttatgaaaaagtcgaatattgtctcactgagtggagattcaatttgaatgcgc 596
Query: 448 tcttgttgatctttcatgaaattcttttctagttccatctctttctttttctgtttggac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tcttgttgatctttcatgaaattcttttctagttccatctctttctttttctgtttggac 536
Query: 508 tgtttagcggtaagttcttcttcttcactccaatattcttctgaatcgggattctcagtg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tgtttagcggtaagttcttcttcttcactccaatattcttctgaatcgggattctcagtg 476
Query: 568 agcttttcaacatcctcgtcattcagaatcttgtttgagttaaaaggtcctttcanaaaa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 475 agcttttcaacatcctcgtcattcagaatcttgtttgagttaaaaggtcctttcaaaaaa 416
Query: 628 gcgaaggtgtccgaatctangaatgcaagaacttttccc-aact-ccatttacgagagt- 684
||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||
Sbjct: 415 gcgaaggtgtccgaatctaggaatgcaagaacttttcccaaactcccatttacgagagtg 356
Query: 685 gcatcaatgtttttaatattcataacttga-caccaactttc-atttcagttttttttga 742
|||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||| ||
Sbjct: 355 gcatcaatgtttttaatattcataacttgagcaccaactttcaattccagtttttttgga 296
Query: 743 -ctaagaa-ttgtctagcagtttccttc-tacctttac-ttgtcgatacca-caccatcc 797
||||||| ||||||||||||||||||| || || ||| ||||||||| || ||||||||
Sbjct: 295 gctaagaagttgtctagcagtttccttcttaactctacgttgtcgataacaccaccatcc 236
Query: 798 gatgcttc-ttagt-atttgcttaccaaggagtgttttaagttttgaatattttgcattg 855
|||||||| | ||| ||| || |||| | |||||||||||| ||||||| || ||||||
Sbjct: 235 gatgcttcataagtcattgtctcaccaggaagtgttttaagtcttgaataattcgcattg 176
Query: 856 gctacctttgctttgggactgaa 878
|||||| |||| ||| ||||||
Sbjct: 175 tctacctctgctctggtactgaa 153
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8317
Number of Sequences: 1807
Number of extensions: 8317
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)