BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA09RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1204 143 7e-34
>3x_Contig1204
Length = 5869
Score = 143 bits (72), Expect = 7e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 48 ttttattttttcgtcactgcattcacattcgactcaagctctattaacaacactcgttaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5796 ttttattttttcgtcactgcattcacattcgactcaagctctattaacaacactcgttaa 5855
Query: 108 tttaagagtatc 119
||||||||||||
Sbjct: 5856 tttaagagtatc 5867
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7825
Number of Sequences: 1807
Number of extensions: 7825
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)