BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA10FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 835 0.0
>3x_Contig1770
Length = 29267
Score = 835 bits (421), Expect = 0.0
Identities = 551/584 (94%), Gaps = 8/584 (1%)
Strand = Plus / Plus
Query: 88 tcatttttgagtctgatccagcgccgatgctgaaatctgagggcaataaaccaggtgcaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12204 tcatttttgagtctgatccagcgccgatgctgaaatctgagggcaataaaccaggtgcaa 12263
Query: 148 aaagaaccactaccctctgcaaagcagccctattatcaatttgcagccagtttggagaat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12264 aaagaaccactaccctctgcaaagcagccctattatcaatttgcagccagtttggagaat 12323
Query: 208 tgtttgtatccctgaaggaaaaaaggactagatctcttaggtcttttatggataacggtt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12324 tgtttgtatccctgaaggaaaaaaggactagatctcttaggtcttttatggataacggtt 12383
Query: 268 tcgatatcttttctaccgatagattcactgctttagtggattttttctttttcttaggaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12384 tcgatatcttttctaccgatagattcactgctttagtggattttttctttttcttaggaa 12443
Query: 328 ccgctagagaagacgcactgatgttatcatgcttcaagttctcaagagatgagccttgta 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12444 ccgctagagaagacgcactgatgttatcatgcttcaagttctcaagagatgagccttgta 12503
Query: 388 cagcacttgaccttcttcttcttctcttttgaccgctttgaagatggcttatatccgnga 447
||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||
Sbjct: 12504 cagcacttgaccttcttcttcttctctttgaaccgctttgagaatggcttatatccgtga 12563
Query: 448 ctacatcatcaatctctgttatcctttcccccaatttgaaccaaaaccaacctaatttgc 507
|||||||||| ||||||||||||||||||||| |||||||||| | | ||||| |||||
Sbjct: 12564 ctacatcatc-atctctgttatcctttccccc-atttgaaccagta-cgacctagtttgc 12620
Query: 508 ttaagattcattccttcgaagtattacctttacagatactcaatctctcaacccctttat 567
|||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 12621 ttaagatttcatccttcgaagtattaccttcacagatactcaatctctcaa-cccttgat 12679
Query: 568 cgtacagacagaaaaggacttgtccgttggccttgctgggggaggaaaaaactgaatttg 627
||||||||||| | ||| ||||| ||| || |||||| ||||| ||||||||||||||
Sbjct: 12680 cgtacagacag-agaggcattgtcgcttgtccctgctggtggagg-aaaaactgaatttg 12737
Query: 628 aatcagcgaaaccctggggagtggcctaacccagggcaactgat 671
||||||||||||| |||| ||| ||||||| || ||||||||||
Sbjct: 12738 aatcagcgaaaccttgggaagt-gcctaacgca-ggcaactgat 12779
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8821
Number of Sequences: 1807
Number of extensions: 8821
Number of successful extensions: 96
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)