BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA10RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1313 1229 0.0
>3x_Contig1313
Length = 8010
Score = 1229 bits (620), Expect = 0.0
Identities = 750/789 (95%), Gaps = 4/789 (0%)
Strand = Plus / Plus
Query: 45 cctgatctacgtagcgtggtgcatttgctgtggggtgttctgtgtcaacatgtgtcagct 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7130 cctgatctacgtagcgtggtgcatttgctgtggggtgttctgtgtcaacatgtgtcagct 7189
Query: 105 tcttgttttgggaagactccggggggaccagactctgggcttccactaggacgagatcgt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7190 tcttgttttgggaagactccggggggaccagactctgggcttccactaggacgagatcgt 7249
Query: 165 tttttttttctttcttcgat-attccatgtcacgtgccaacgcacgtgacatggaatttc 223
|||||||||||||||||||| ||| | | |||| ||||||||||||||||||||||||||
Sbjct: 7250 tttttttttctttcttcgattatttcctttcac-tgccaacgcacgtgacatggaatttc 7308
Query: 224 cctttttcgttctcttttctagtcgtgtcaaatcatcaatcacatttgtgatcatttagc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7309 cctttttcgttctcttttctagtcgtgtcaaatcatcaatcacatttgtgatcatttagc 7368
Query: 284 catatgctgtatactgaatgctgaatgctgaatattgtagactatgtgcaacgtactata 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7369 catatgctgtatactgaatgctgaatgctgaatattgtagactatgtgcaacgtactata 7428
Query: 344 catgtgctaaactgagcagacagacaattggattaccggaaattgtcttctacaacatat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7429 catgtgctaaactgagcagacagacaattggattaccggaaattgtcttctacaacatat 7488
Query: 404 acctttgataccataaaaacaagcaaatattcttacttcaaacacacccgatgaatctac 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7489 acctttgataccataaaaacaagcaaatattcttacttcaaacacacccgatgaatctac 7548
Query: 464 ttgccaaggatgaagatttaaggtacatggctttgaaagggtacatcgacagcaattggc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7549 ttgccaaggatgaagatttaaggtacatggctttgaaagggtacatcgacagcaattggc 7608
Query: 524 aaaatgtcgaaccaatccccactgaagacaacagttcggcttctagtgatgaggaacgtg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7609 aaaatgtcgaaccaatccccactgaagacaacagttcggcttctagtgatgaggaacgtg 7668
Query: 584 tcgttctcatgggcttacacgataccagcgtacttatccaggatttagcatcgacgtcac 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7669 tcgttctcatgggcttacacgataccagcgtacttatccaggatttagcatcgacgtcac 7728
Query: 644 ttattccatccgtttgcaaatgcaaggat-tcgcttgcgtgtacactttggttcatagnc 702
|||||| ||| ||||||||||||||||| ||||| |||||||||||| | ||||| |
Sbjct: 7729 ttattcaatcgttttgcaaatgcaaggatatcgctgcggtgtacactttgttccatagtc 7788
Query: 703 tattgaacgatttgtcgctttcttgttcaanaggtctcaagaccgttctcgtgtctacaa 762
||||||||||| |||||||| | ||| | | |||||||||||| | ||||||||||| |
Sbjct: 7789 tattgaacgatatgtcgcttccctgtacgagaggtctcaagacgttactcgtgtctacga 7848
Query: 763 gtgcttaaggaggccccgggtcaatttcacttcaaaaaccttaccaaaaattggcttaat 822
||||| | || | |||| |||| |||||| || ||||| |||| ||| |||| ||||||
Sbjct: 7849 gtgctgagggcaggcccgtgtcagtttcac-tcgaaaacgttacgaaatattgtcttaat 7907
Query: 823 ttggnggaa 831
|||| ||||
Sbjct: 7908 ttggtggaa 7916
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6839
Number of Sequences: 1807
Number of extensions: 6839
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)