BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA11FM1.SCF screened BAC_end
(773 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 410 e-114
>3x_Contig1801
Length = 57606
Score = 410 bits (207), Expect = e-114
Identities = 216/218 (99%), Gaps = 2/218 (0%)
Strand = Plus / Minus
Query: 88 agatcggaagaataatcagacttcccattttctaaacttgtttcgtgcggttgctgcgct 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11399 agatcggaagaataatcagacttcccattttctaaacttgtttcgtgcggttgctgcgct 11340
Query: 148 gtaccatacgcttctcttcttcttgtttctctatccattgcatcagagtaacttaatgac 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11339 gtaccatacgcttctcttcttcttgtttctctatccattgcatcagagtaacttaatgac 11280
Query: 208 tatatatctcttaacgaaaggaatattaaacccatgtacatttaaatatcatatatattt 267
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 11279 tatatatctcttaacgaaaggaatattaaacccatgtaca--taaatatcatatatattt 11222
Query: 268 ctgaaaatatcacatttaatattgagagatggactgaa 305
||||||||||||||||||||||||||||||||||||||
Sbjct: 11221 ctgaaaatatcacatttaatattgagagatggactgaa 11184
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,214
Number of Sequences: 1807
Number of extensions: 32214
Number of successful extensions: 3448
Number of sequences better than 1.0e-20: 1
length of query: 773
length of database: 10,358,551
effective HSP length: 16
effective length of query: 757
effective length of database: 10,329,639
effective search space: 7819536723
effective search space used: 7819536723
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)