BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA11RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1611 1209 0.0
>3x_Contig1611
Length = 15286
Score = 1209 bits (610), Expect = 0.0
Identities = 684/703 (97%), Gaps = 6/703 (0%)
Strand = Plus / Plus
Query: 45 ttgtccctaatgtctacaatgtatcaattccgttttctagcaactattgctttccgccta 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6114 ttgtccctaatgtctacaatgtatcaattccgttttctagcaactattgctttccgccta 6173
Query: 105 ccagtaacaaattcctatctactattttttattgccgcgcccatttcccgttggatacag 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6174 ccagtaacaaattcctatctactattttttattgccgcgcccatttcccgttggatacag 6233
Query: 165 tccagcgctgccggaagtgtttccagttaacacgctcgtcagtctactttccactatgcg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6234 tccagcgctgccggaagtgtttccagttaacacgctcgtcagtctactttccactatgcg 6293
Query: 225 acgaatatcaataaatgttgtctactccgcataatatacggagtgacttgtcttattata 284
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6294 acgaatatcaaaaaatgttgtctactccgcataatatacggagtgacttgtcttattata 6353
Query: 285 gccgcagactgacagcattatcgtcagaaagaatcaaaaagcgacgctaggaacgaaagc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6354 gccgcagactgacagcattatcgtcagaaagaatcaaaaagcgacgctaggaacgaaagc 6413
Query: 345 agctcaggaaccaaaaaaaaatatttgacagtgggacccatggccaaattatgtactatt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6414 agctcaggaaccaaaaaaaaatatttgacagtgggacccatggccaaattatgtactatt 6473
Query: 405 agttaatcatttctggaagactctggattaacataaaatctcatctctagtagaaccaac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6474 agttaatcatttctggaagactctggattaacataaaatctcatctctagtagaaccaac 6533
Query: 465 aatttaaccttaaccccttctctctggtaagcgctgaacgcatggccatcaggagattgt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6534 aatttaaccttaaccccttctctctggtaagcgctgaacgcatggccatcaggagattgt 6593
Query: 525 ctgatatttttaggcagggccctttctttttcaagcacagagatggaactgcccctcgga 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6594 ctgatatttttaggcagggccctttctttttcaagcacagagatggaactgcccctcgga 6653
Query: 585 gttantttnntttttttttttgaatattttctctttggtatcaaaaggtaacggttcctt 644
|||| ||| ||||||||||| |||||||||||||| ||||||| ||||||| |||| |
Sbjct: 6654 gttatttt--ttttttttttttgatattttctctttgttatcaaagggtaacgtttcc-t 6710
Query: 645 tgatactgtaataataccttaatttggggtgccgtnttacgtatgggcaatatgatagcc 704
||||||||||||||||||||||||| ||||| ||| |||||||| |||||||||||||||
Sbjct: 6711 tgatactgtaataataccttaattt-gggtg-cgttttacgtat-ggcaatatgatagcc 6767
Query: 705 cggtaattttctagacatgctaaactaaactagatagaatggg 747
||||||| |||||||||||| ||||||||||||||| ||||
Sbjct: 6768 gcgtaatttcctagacatgctagactaaactagatagagtggg 6810
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,637
Number of Sequences: 1807
Number of extensions: 12637
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)