BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZA12RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1739 1055 0.0
>3x_Contig1739
Length = 22061
Score = 1055 bits (532), Expect = 0.0
Identities = 599/616 (97%), Gaps = 4/616 (0%)
Strand = Plus / Plus
Query: 54 cattggaaatattcaaatgtttttttctctggattttagttgtttttttttcgacctttg 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9446 cattggaaatattcaaatgtttttttctctggattttagttgtttttttttcgacctttg 9505
Query: 114 acgattttctgtattttttcgaaaagttaatagtcaattttgtcttttactagtatgaaa 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9506 acgattttctgtattttttcgaaaagttaatagtcaattttgtcttttactagtatgaaa 9565
Query: 174 tgccaattgtgtcacgtacagagctgacaattaaacttaaatcataattacaggttttag 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9566 tgccaattgtgtcacgtacagagctgacaattaaacttaaatcataattacaggttttag 9625
Query: 234 aatacatatgaaactccccgaatgttttttttattatattgacaaatgacacgacgaagg 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9626 aatacatatgaaactccccgaatgttttttttattatattgacaaatgacacgacgaagg 9685
Query: 294 tccaattttttgctatgtaaaaattatatacatttttgatcgatgaagaaaaaaagtctc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9686 tccaattttttgctatgtaaaaattatatacatttttgatcgatgaagaaaaaaagtctc 9745
Query: 354 tagaagtggacgaatttctgggcaaagttctcatggccatcttcagcgctcttaccgatc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9746 tagaagtggacgaatttctgggcaaagttctcatggccatcttcagcgctcttaccgatc 9805
Query: 414 ttaatatatttatcattttttatgttttccttaatatcgtggtgaagtgcttataagtaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 9806 ttaatatatttatcattttttatgttttccttaatatcgtggtgaagtgctattaagtaa 9865
Query: 474 ttatcaaagctttcgaccaactcgatggatttatcctcaaccatcagttggttcatcaca 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9866 ttatcaaagctttcgaccaactcgatggatttatcctcaaccatcagttggttcatcaca 9925
Query: 534 tgagaataat-aggattcacgttaggtctc-atgggacaactgg-agatagtctatattt 590
|||||||||| ||||| ||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 9926 tgagaataataaggatccacgttaggtctcaatgggacaactggaagatagtctatattt 9985
Query: 591 atgatttgactccaatttttgaatccattgc-ggccttggaatttatatttgggtctaaa 649
|||||||||||||||||||||| |||||| ||||||| |||||||| | |||||||
Sbjct: 9986 atgatttgactccaatttttgatcacattgcgggccttgatatttatatcggtgtctaaa 10045
Query: 650 tcttgcaccctgccac 665
||| ||| ||||||||
Sbjct: 10046 tctggcaacctgccac 10061
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,090
Number of Sequences: 1807
Number of extensions: 11090
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)