BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZB02FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1296 1283 0.0
>3x_Contig1296
Length = 7334
Score = 1283 bits (647), Expect = 0.0
Identities = 710/726 (97%), Gaps = 4/726 (0%)
Strand = Plus / Minus
Query: 87 tgttggcatgtgccctatagcttgtttacaccgttacgaattgaagcaaactggcaactg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 tgttggcatgtgccctatagcttgtttacaccgttacgaattgaagcaaactggcaactg 1402
Query: 147 ctcatctatagggaaagatacacggagataatgggtgcgaccggcagtgaacatgcaaga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1401 ctcatctatagggaaagatacacggagataatgggtgcgaccggcagtgaacatgcaaga 1342
Query: 207 ggaaaaactatgataaataaagtggggctctaacgaagccccactcttatttttcattac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 ggaaaaactatgataaataaagtggggctctaacgaagccccactcttatttttcattac 1282
Query: 267 ctctactcttacggttattccttgcaagaaactccagacggaggccccctcaaaattcca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 ctctactcttacggttattccttgcaagaaactccagacggaggccccctcaaaattcca 1222
Query: 327 aagtaatgaggggcagaagtgggaaacctagcacaaaaacagaaggagcaaaaaaaaaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1221 aagtaatgaggggcagaagtgggaaacctagcacaaaaacagaaggagcaaaaaaaaaaa 1162
Query: 387 gaaaaaccgatttttgcccctcaccgattaattcttcctttttcaacagtaaaagataaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 gaaaaaccgatttttgcccctcaccgattaattcttcctttttcaacagtaaaagataaa 1102
Query: 447 cttcctagaaatgcagcagtgaggccaggaacgaaataccaactgcccgtactgttctgc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 cttcctagaaatgcagcagtgaggccaggaacgaaataccaactgcccgtactgttctgc 1042
Query: 507 gtgcgaaaccttcttttaacattcattcctcgaactaggcaattgatgacatatgccagt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 gtgcgaaaccttcttttaacattcattcctcgaactaggcaattgatgacatatgccagt 982
Query: 567 ccaaagatagaaatagcacttaaagcagagaggggagccaagggtgtctgctaggaacag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 ccaaagatagaaatagcacttaaagcagagaggggagccaagggtgtctgctaggaacag 922
Query: 627 aagctcgaagagtgtcaagaaaagaggtaccctncagacgggttctatatcgctttctaa 686
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 921 aagctcgaagagtgtcaagaaaagaggtaccctcaagacgggttctatatcgctttctaa 862
Query: 687 aggtatcacatagttaggcacgggtttgtaagatatccggtttgtacaaaaagaaaataa 746
|||||||||||||||||||| |||||||||||||| |||||||||| |||||||| |||
Sbjct: 861 gggtatcacatagttaggcac-ggtttgtaagatattcggtttgtacgaaaagaaattaa 803
Query: 747 ctggaatagccaagtgatgtttctacagttccggaacacgcagtttagaaaaaggtcatc 806
||| ||||||| ||||||||| ||||| ||| ||||||||||||||| | |||||||||
Sbjct: 802 ctgaaatagcc-agtgatgttcttacag-tcccgaacacgcagtttag-agaaggtcatc 746
Query: 807 ccaagg 812
| ||||
Sbjct: 745 caaagg 740
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,521
Number of Sequences: 1807
Number of extensions: 11521
Number of successful extensions: 151
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)