BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZB02RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1587 1631 0.0
>3x_Contig1587
Length = 10277
Score = 1631 bits (823), Expect = 0.0
Identities = 877/887 (98%), Gaps = 6/887 (0%)
Strand = Plus / Minus
Query: 46 tcttgaattgaaatcgcatatgtttggaaacactacagcaagcatttcaagacagcaatc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3153 tcttgaattgaaatcgcatatgtttggaaacactacagcaagcatttcaagacagcaatc 3094
Query: 106 tttctgtgggaaatcaggacagcctacattacaaaacaataactgtaatactactaatac 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3093 tttctgtgggaaatcaggacagcctacattacaaaacaataactgtaatactactaatac 3034
Query: 166 acttcttacagaacaaactttaacgaataacactaatgcaactagtgcagcaacaactac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3033 acttcttacagaacaaactttaacgaataacactaatgcaactagtgcagcaacaactac 2974
Query: 226 tctgacttctcctgttggtcagaatagtaatgcaagcatttcacgcttacacaacttgtt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2973 tctgacttctcctgttggtcagaatagtaatgcaagcatttcacgcttacacaacttgtt 2914
Query: 286 aagtacggagaataaggacgtgaatagttcttctgaacaattggcacactcattttcctc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2913 aagtacggagaataaggacgtgaatagttcttctgaacaattggcacactcattttcctc 2854
Query: 346 gatggagattgtggacaacaaagtccctggcgatgaatccacgaaggaagctgcttttaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2853 gatggagattgtggacaacaaagtccctggcgatgaatccacgaaggaagctgcttttaa 2794
Query: 406 tacttcaattaacgagaatcggcctgatgtaatacaggtgaaaatagcagatttaggaaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2793 tacttcaattaacgagaatcggcctgatgtaatacaggtgaaaatagcagatttaggaaa 2734
Query: 466 tgcatgttggtacgacgaacattacaccaatgcaatccaaacaagagagtatcgttcacc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2733 tgcatgttggtacgacgaacattacaccaatgcaatccaaacaagagagtatcgttcacc 2674
Query: 526 agaagtaattctagactgttcttggggtgccagtgcagatatatggtcttttgcctgctt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2673 agaagtaattctagactgttcttggggtgccagtgcagatatatggtcttttgcctgctt 2614
Query: 586 aatatttgagcttctcacaggagatttcttgtttgaaccacaaaacggtcactcatatac 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2613 aatatttgagcttctcacaggagatttcttgtttgaaccacaaaacggtcactcatatac 2554
Query: 646 aaaggacgatgaccatattgcgcaaatcatagaattactgggcaatattccagagagtct 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2553 aaaggacgatgaccatattgcgcaaatcatagaattactgggcaatattccagagagtct 2494
Query: 706 aatgacgaccggcagagccgttagaacttttttcacgtccaggnggaaagttgagaaata 765
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 2493 aatgacgaccggcagagccgttagaacttttttcacgtccagg-ggagagttgagaaata 2435
Query: 766 tttcaagattaaagtactggccattgaagaagtg-tttaattgaaaagtacaacatggcg 824
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 2434 tttcaagattaaagtactggccattgaag-agtgttttaattgaaaagtacaacatggcg 2376
Query: 825 cccaaagaagcagaggaaatttcagatttcttactgccaatgctatcgatagatccaagg 884
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2375 ccaaaggaagcagaggaaatttcagatttcttactgccaatgctatcgatagatccaagg 2316
Query: 885 -aaagagccgnatgca-gaagcatgctgaatcatccatggctatctg 929
||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 2315 aaaagagccg-atgcaggaggcatgctgaatcatccatggctatctg 2270
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6382
Number of Sequences: 1807
Number of extensions: 6382
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)