BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC45ZB03FM1.SCF screened BAC_end
         (919 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1582                                                        1118   0.0  

>3x_Contig1582 
          Length = 14087

 Score = 1118 bits (564), Expect = 0.0
 Identities = 669/699 (95%), Gaps = 4/699 (0%)
 Strand = Plus / Plus

                                                                         
Query: 86    agtttccaaattttcgtttgtatagttggtgataaaccagatgtagttacaactgcctag 145
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13006 agtttccaaattttcgtttgtatagttggtgataaaccagatgtagttacaactgcctag 13065

                                                                         
Query: 146   atcagatgtaaatatggtatcgatatcttgccatgaggaaattatggcacccaactcatt 205
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13066 atcagatgtaaatatggtatcgatatcttgccatgaggaaattatggcacccaactcatt 13125

                                                                         
Query: 206   cttacttgtttttttgataagattgttgtcactgtcataacgtaacatgtcgcatacgca 265
             |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13126 cttacttgtttccttgataagattgttgtcactgtcataacgtaacatgtcgcatacgca 13185

                                                                         
Query: 266   tctcatcaatatatccctaaactcttctctctcctggacaatcgaaacgaattcttccat 325
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13186 tctcatcaatatatccctaaactcttctctctcctggacaatcgaaacgaattcttccat 13245

                                                                         
Query: 326   gaccatattcaaaaacttgttattcgtatcttcacctccgttcgagactttaatggccaa 385
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13246 gaccatattcaaaaacttgttattcgtatcttcacctccgttcgagactttaatggccaa 13305

                                                                         
Query: 386   ttgtgagatggattggatagctttggtcacgaattcatgatcaaagtcctttgcatattc 445
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13306 ttgtgagatggattggatagctttggtcacgaattcatgatcaaagtcctttgcatattc 13365

                                                                         
Query: 446   ttttaattcgttgaaaagcatctggcaatgtttcaaattatccacgggcactaatctgag 505
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13366 ttttaattcgttgaaaagcatctggcaatgtttcaaattatccacgggcactaatctgag 13425

                                                                         
Query: 506   caagatgtctaatttctctatcttcacgtacaatggatcattaaatttgacatagaatat 565
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13426 caagatgtctaatttctctatcttcacgtacaatggatcattaaatttgacatagaatat 13485

                                                                         
Query: 566   tcttaactcttttcttaacaagtttgggaaagcatccaaattaatntttata-ttctcaa 624
             |||||||||||| ||||||||||||||||| ||||||||| ||||  ||||| |||||||
Sbjct: 13486 tcttaactctttccttaacaagtttgggaaggcatccaaaataattcttatatttctcaa 13545

                                                                         
Query: 625   agc-acatattggattctcactggggtcgactttaatgagaccaatgccgttgataactt 683
             ||| |||||||||||   ||||||||||||| ||| |||||||||||| |||||||||||
Sbjct: 13546 agcaacatattggatctccactggggtcgacattagtgagaccaatgcagttgataactt 13605

                                                                         
Query: 684   gttgtatatagaatcatggactggtttcaaatttggtagagttttaaatttccatttaac 743
             |||||||||||| ||||||||||  |||||||||||||||  | | | | | ||||||||
Sbjct: 13606 gttgtatatagagtcatggactgtgttcaaatttggtagatgtatgagtatacatttaac 13665

                                                    
Query: 744   -cttgtcaagacccctgatggatttaccgtgttgcaaat 781
              ||  |||||||| |||||||||||| ||||||||||||
Sbjct: 13666 actgatcaagaccactgatggattta-cgtgttgcaaat 13703


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7442
Number of Sequences: 1807
Number of extensions: 7442
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)