BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZB03RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig382 1473 0.0
>3x_Contig382
Length = 1656
Score = 1473 bits (743), Expect = 0.0
Identities = 835/857 (97%), Gaps = 7/857 (0%)
Strand = Plus / Plus
Query: 45 gctttaaaagaatctcatcaccaagacacatgtaagaaaacatttgacgaggaggtgttc 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gctttaaaagaatctcatcaccaagacacatgtaagaaaacatttgacgaggaggtgttc 798
Query: 105 tatagtggtgactagttcagaacgtgaaaacctggtagctttgaatagacttcttgcata 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tatagtggtgactagttcagaacgtgaaaacctggtagctttgaatagacttcttgcata 858
Query: 165 atggtactatcttccagtcttttcgttcaaaaaagaagtacaactactgctttgaagcaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 atggtactatcttccagtcttttcgttcaaaaaagaagtacaactactgctttgaagcaa 918
Query: 225 ccaaaagaattaggtcattattcgagaacacaggacaatggatttttagtcaacgatgat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 ccaaaagaattaggtcattattcgagaacacaggacaatggatttttagtcaacgatgat 978
Query: 285 tcgaggctagcatactattacttgccagatacggatctagacaagaagcttgatctttta 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 tcgaggctagcatactattacttgccagatacggatctagacaagaagcttgatctttta 1038
Query: 345 agtggaatcaagaagttcaaagagtgtaatacggaagaattcgactctacaacattgcat 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 agtggaatcaagaagttcaaagagtgtaatacggaagaattcgactctacaacattgcat 1098
Query: 405 ggattactttcgactttggaagagtatgagagacgtaagagtaagaagacgaaggtggat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1099 ggattactttcgactttggaagagtatgagagacgtaagagtaagaagacgaaggtggat 1158
Query: 465 atcattacgttcagaggtatcatacggaagctcatctccagtgcttttgattcatcacag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1159 atcattacgttcagaggtatcatacggaagctcatctccagtgcttttgattcatcacag 1218
Query: 525 ttcaatccggtaaatttccgtattgtttcgtttgatggacaactattcattaaggaagtc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1219 ttcaatccggtaaatttccgtattgtttcgtttgatggacaactattcattaaggaagtc 1278
Query: 585 aagacagacgcttcggaaacctccattaacaagaatagggagtcgttacaggcaagggca 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1279 aagacagacgcttcggaaacctccattaacaagaatagggagtcgttacaggcaagggca 1338
Query: 645 tattacagtggttacaaatttgaagcacttgcaaccttatcgctgccactaccgttggta 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1339 tattacagtggttacaaatttgaagcacttgcaaccttatcgctgccactaccgttggta 1398
Query: 705 cccagaactacattgggaaagagacct-anaagaatattnaacatggggaccaattcatc 763
|||||||||||||||| |||||||||| | |||| |||| | |||||||||||||||||
Sbjct: 1399 cccagaactacattggaaaagagacctaaaaagattattaacaatggggaccaattcatc 1458
Query: 764 tcaatggttagaacaggaaatagtaaatgtaagatattgatcggtgca-gagtggactgt 822
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 1459 tcaatggttagaacaggaataggtaaatgtaagatattgatcggtgcacaagtggactgt 1518
Query: 823 atttttgatttt-aagaagattc-gatgac-acctggagcattacgcaga-ttgaattgt 878
|||||||||||| |||| ||||| |||||| ||||| ||||||||||| | ||||| |||
Sbjct: 1519 atttttgattttaaagaggattcagatgacaacctgaagcattacgcacagttgaaatgt 1578
Query: 879 a-cacattggtcaatac 894
| |||| ||||||||||
Sbjct: 1579 accacaatggtcaatac 1595
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6306
Number of Sequences: 1807
Number of extensions: 6306
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)