BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZB05FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1476 1090 0.0
>3x_Contig1476
Length = 8689
Score = 1090 bits (550), Expect = 0.0
Identities = 682/716 (95%), Gaps = 9/716 (1%)
Strand = Plus / Plus
Query: 87 ctagccgtatttctagtatagtcacccttttgataatatatatatatatacatatatatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3938 ctagccgtatttctagtatagtcacccttttgataatatatatatatatacatatatatt 3997
Query: 147 taaatatacgtatatctttgatggtatggctattgtttggaactaaaatattggtttacg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3998 taaatatacgtatatctttgatggtatggctattgtttggaactaaaatattggtttacg 4057
Query: 207 ggcctatttcattatctcttatcttggcacaaggttgtaagattaaatttaccataagct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4058 ggcctatttcattatctcttatcttggcacaaggttgtaagattaaatttaccataagct 4117
Query: 267 tttgcactgctgtaagtaggtacaaggacaccatcaaaagttctttaaattgtgttagtt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4118 tttgcactgctgtaagtaggtacaaggacaccatcaaaagttctttaaattgtgttagtt 4177
Query: 327 tcttcagtgctgctttcgtatttcgtcaccgtatgtgacagccttaagcaatatttgaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4178 tcttcagtgctgctttcgtatttcgtcaccgtatgtgacagccttaagcaatatttgaaa 4237
Query: 387 ctttccaatcaaattctaaggtaaaagaaaagaagaagtatttataagtagtgtggttaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4238 ctttccaatcaaattctaaggtaaaagaaaagaagaagtatttataagtagtgtggttaa 4297
Query: 447 tcatcaacgtttttgttttcaaatagcaggagcaaaggtagcaaaagcgagggctccgat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4298 tcatcaacgtttttgttttcaaatagcaggagcaaaggtagcaaaagcgagggctccgat 4357
Query: 507 ctatcgcatatccgttaaagctgtctangaccacctgattgctctttgacgttagctaag 566
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4358 ctatcgcatatccgttaaagctgtctaggaccacctgattgctctttgacgttagctaag 4417
Query: 567 aaggttgcactttatt-attcggcgttggtgtatctgtacgaa-ttatagagcgtattaa 624
|||||||||||||||| || |||||| | |||||||||||||| ||||||||||||||||
Sbjct: 4418 aaggttgcactttattaatccggcgtggttgtatctgtacgaatttatagagcgtattaa 4477
Query: 625 -tttatcgggaagtttcaaatttggaaatttg-accttaaggtgagttaaataccttaaa 682
|||||||| | | |||||||||||||||||| || ||||| ||||| ||||| ||| |
Sbjct: 4478 ttttatcggaagggttcaaatttggaaatttgaacgttaagttgagtaaaatagctttag 4537
Query: 683 aaattaaaacccgggtgtctgatttaagcctactttgaagttcacaagtccctttttatt 742
| ||||||| ||| ||||||||| | ||||||||| ||||||||| ||| || ||||| |
Sbjct: 4538 agattaaaagccgtgtgtctgatatcagcctacttggaagttcac-agtaccattttagt 4596
Query: 743 gaaaaaggattaaacgctggttttttgaaactttacccgtggggtttaaacctgaa 798
||||||||||| |||| | ||||||||||||| |||| ||| |||||||||||||
Sbjct: 4597 gaaaaaggatt-aacg-ttgttttttgaaactatacc--tggtgtttaaacctgaa 4648
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,838
Number of Sequences: 1807
Number of extensions: 12838
Number of successful extensions: 1521
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)