BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZB05RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1543 726 0.0
3x_Contig1655 365 e-100
>3x_Contig1543
Length = 9648
Score = 726 bits (366), Expect = 0.0
Identities = 454/474 (95%), Gaps = 7/474 (1%)
Strand = Plus / Minus
Query: 289 tggttctaaagtatcagattctatatcaatttcgatagcagaatcctggctaatagcatt 348
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 9613 tggttctaaagtatcagatgctatatcaatgtcgatagcagaatcctggctaatagcatt 9554
Query: 349 gacagtagtagccttgtcaactttcccagtgttctgaaagaatgagagaatgccccgtct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9553 gacagtagtagccttgtcaactttcccagtgttctgaaagaatgagagaatgccccgtct 9494
Query: 409 cttctggttcgatactgatggtttcatttcactcatggttgggctaccgacgtattgcaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9493 cttctggttcgatactgatggtttcatttcactcatggttgggctaccgacgtattgcaa 9434
Query: 469 agatgacaagattatcaaaggtatatgtgttcagcagcttatgccaggctcctattgagg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9433 agatgacaagattatcaaaggtatatgtgttcagcagcttatgccaggctcctattgagg 9374
Query: 529 cggtttgtagagcctcagcgtcttgtcattgaatggtgatctgtataactcctctagtga 588
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 9373 cggtttgtagagcctcagcgtcttgtcattgaatggtgatctgtataacttctctagtga 9314
Query: 589 tgcgtc-aaacgctaaatgaaattc-ttacatattt-actttcgtgtcagtagggt-aca 644
|||||| |||||||||||| ||||| |||||||||| ||||||||||||||||||| |||
Sbjct: 9313 tgcgtcaaaacgctaaatggaattctttacatatttcactttcgtgtcagtagggtaaca 9254
Query: 645 ttgttgtgataa-tgtgtcacaggacat-attccgatgatgccacttaaaaat-agttta 701
|||||||||||| ||||||||||||||| || | |||||||| ||| | | || ||||||
Sbjct: 9253 ttgttgtgataattgtgtcacaggacataatacagatgatgcgactaagagataagttta 9194
Query: 702 tccagtattttaatgatacgggttaacatcccagccttaggatttttaaagatt 755
| |||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 9193 tacagtattttaatgatacgggttaacatcccaggcttaggatttttagagatt 9140
>3x_Contig1655
Length = 16228
Score = 365 bits (184), Expect = e-100
Identities = 184/184 (100%)
Strand = Plus / Minus
Query: 42 gcttcttcctttcacgttccaatctttcttcttctttccttttcgacttagcttgcttct 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gcttcttcctttcacgttccaatctttcttcttctttccttttcgacttagcttgcttct 138
Query: 102 ctttttgtctcctaagttctcgctctgctttcttgtttgccatcgtggatgcagagtcat 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ctttttgtctcctaagttctcgctctgctttcttgtttgccatcgtggatgcagagtcat 78
Query: 162 tgtcttctgcaccgcctgtcttctctgtttcttgttgactatctgctgcatctaatgtag 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 tgtcttctgcaccgcctgtcttctctgtttcttgttgactatctgctgcatctaatgtag 18
Query: 222 cagt 225
||||
Sbjct: 17 cagt 14
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7650
Number of Sequences: 1807
Number of extensions: 7650
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 2
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)