BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZB06FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1305 1168 0.0
>3x_Contig1305
Length = 9229
Score = 1168 bits (589), Expect = 0.0
Identities = 621/628 (98%), Gaps = 3/628 (0%)
Strand = Plus / Minus
Query: 87 ctgaaaatagaaaaggctttaaatataaaagaaggttctattattgatgatatcgatgct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5080 ctgaaaatagaaaaggctttaaatataaaagaaggttctattattgatgatatcgatgct 5021
Query: 147 tctttcgttctacgaatcatgatcacagatatcagtgtattaaaggaaaagatcgggttc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5020 tctttcgttctacgaatcatgatcacagatatcagtgtattaaaggaaaagatcgggttc 4961
Query: 207 gaaaaactacttgatatatatttatcacggaatgattttgctacggtggagtccttgtta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4960 gaaaaactacttgatatatatttatcacggaatgattttgctacggtggagtccttgtta 4901
Query: 267 caagccaacgataaggtagtgctgaaagttatcgatcactatctaagtctcaacaatact 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4900 caagccaacgataaggtagtgctgaaagttatcgatcactatctaagtctcaacaatact 4841
Query: 327 agggtcattagtcaattccttaacaagaatacgtgttgtataaacgactctgggctactt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4840 agggtcattagtcaattccttaacaagaatacgtgttgtataaacgactctgggctactt 4781
Query: 387 atagaaattttggaaaaaatacccccaaccattcaaatatcagtgttatcgggtttccta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4780 atagaaattttggaaaaaatacccccaaccattcaaatatcagtgttatcgggtttccta 4721
Query: 447 tttccgttactcagacgaaaagacgaatcaacatataatctacagattaagaaaggaatt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4720 tttccgttactcagacgaaaagacgaatcaacatataatctacagattaagaaaggaatt 4661
Query: 507 ttaaggcatcgtactcagaatataaacaatatcgaacgttgtttagaactgtgaaatagt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4660 ttaaggcatcgtactcagaatataaacaatatcgaacgttgtttagaactgtgaaatagt 4601
Query: 567 gtgatatatcattaagtgcattgtg-aaatatatacatgaaaaatagnagttaatcttgt 625
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 4600 gtgatatatcattaagtgcattgtgaaaatatatacatgaaaaatagaggttaatcttgt 4541
Query: 626 ctataggcgatctggcttgttatcaagctgtcaattcagagactggtgccaaaccggaac 685
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4540 ctataggcgatctggcttgtaatcaagctgtcaattcagagactggtgccaaaccggaa- 4482
Query: 686 cagactttttgcaaagatttctttttca 713
||||||||||||||| | ||||||||||
Sbjct: 4481 cagactttttgcaaa-agttctttttca 4455
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9437
Number of Sequences: 1807
Number of extensions: 9437
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)