BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZB06RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 1281 0.0
>3x_Contig1780
Length = 27883
Score = 1281 bits (646), Expect = 0.0
Identities = 680/690 (98%), Gaps = 1/690 (0%)
Strand = Plus / Minus
Query: 50 taaaattttaaatctttattgggtaagacaagggctttccgccctataatattctgaaat 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25108 taaaattttaaatctttattgggtaagacaagggctttccgccctataatattctgaaat 25049
Query: 110 aggtctgaggagatatctcatccctataccgaaaaagaaaacgttcactcagtctggctt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25048 aggtctgaggagatatctcatccctataccgaaaaagaaaacgttcactcagtctggctt 24989
Query: 170 agagtgataacctttatttttttttcggcttcaggtgtgtcttaagatattcgtcctatc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24988 agagtgataacctttatttttttttcggcttcaggtgtgtcttaagatattcgtcctatc 24929
Query: 230 gagccttgggttagggttgtgtaaaatttgtatatgctcttaaaatccggatctaggatc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24928 gagccttgggttagggttgtgtaaaatttgtatatgctcttaaaatccggatctaggatc 24869
Query: 290 tataattatctgctgttacaccccctcctatagtaaaagcaaccgatggcatctgaccga 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24868 tataattatctgctgttacaccccctcctatagtaaaagcaaccgatggcatctgaccga 24809
Query: 350 aagaatgtgttttttttcttttcactgtgtgcttcctccataattgctatttgcttgtgg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24808 aagaatgtgttttttttcttttcactgtgtgcttcctccataattgctatttgcttgtgg 24749
Query: 410 cccttgcttgggcaattggcaaaccacgcgtataccctattctaatcttcttcattttct 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24748 cccttgcttgggcaattggcaaaccacgcgtataccctattctaatcttcttcattttct 24689
Query: 470 gatccgctggtgaaggctcagttccttttttttttttctcgatcactctcttgggaactg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24688 gatccgctggtgaaggctcagttccttttttttttttctcgatcactctcttgggaactg 24629
Query: 530 gtgtgcattttctttttagtggtggtattttaatactacgactgcttcttgcattggtat 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24628 gtgtgcattttctttttagtggtggtattttaatactacgactgcttcttgcattggtat 24569
Query: 590 atacttttttattatcgggcctatgtgcttgtatgtcatggtgctgcccctgtacatatt 649
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 24568 atacttttttattatcgggcctatgtgcttgtatgtcatggtgctgccctgttacatatt 24509
Query: 650 ttcttcttctggtcctccttcttca-ctttcactgccgtttttactcactcccatacagt 708
|||||||||| || || |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 24508 ttcttcttcttgttcttcttcttcatcttccactgccgtttttactcactcccatacagt 24449
Query: 709 gcgcagtaatagggagaccttcggacagat 738
|||||||||||||||||| | |||||||||
Sbjct: 24448 gcgcagtaatagggagacttacggacagat 24419
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,766
Number of Sequences: 1807
Number of extensions: 16766
Number of successful extensions: 152
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)