BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZB07FM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1354 839 0.0
>3x_Contig1354
Length = 7778
Score = 839 bits (423), Expect = 0.0
Identities = 435/440 (98%)
Strand = Plus / Minus
Query: 86 cccaccgtcagttgtcttgtaactgttcctgtttttgagtcgtgcagttgtttaacatct 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6047 cccaccgtcagttgtcttgtaactgttcctgtttttgagtcgtgcagttgtttaacatct 5988
Query: 146 cgtgatttttatatgtatcccgcatttggagaaaaaggtacgggtactgttaagaacact 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5987 cgtgatttttatatgtatcccgcatttggagaaaaaggtacgggtactgttaagaacact 5928
Query: 206 ttctctgccttcactgccttcgttgctgctgtctgctgagataccgnactttttttttag 265
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5927 ttctctgccttcactgccttcgttgctgctgtctgctgagataccgtactttttttttag 5868
Query: 266 ttttttttttatttcctttgccataatagaaagaatttcacaccgttatactttaacagt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5867 ttttttttttatttcctttgccataatagaaagaatttcacaccgttatactttaacagt 5808
Query: 326 ggtctttttttaaacaactatgaactggttttacgtttggtggtatttcgggaacgagat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5807 ggtctttttttaaacaactatgaactggttttacgtttggtggtatttcgggaacgagat 5748
Query: 386 tcggttcagatacagtttacattattgggacatagcttatatcagcaggggccattcaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5747 tcggttcagatacagtttacattattgggacatagcttatatcagcaggggccattcaag 5688
Query: 446 cctgctttgcatctgnctctctcttcctctctttcttttttttttttcctgcttactgcc 505
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5687 cctgctttgcatctgtctctctcttcctctctttctcttttttttttcctgcttactgcc 5628
Query: 506 tttctttttnctgtttgatt 525
|||||| || ||||||||||
Sbjct: 5627 tttcttcttcctgtttgatt 5608
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,629
Number of Sequences: 1807
Number of extensions: 16629
Number of successful extensions: 306
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)