BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZB08FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1361 1140 0.0
>3x_Contig1361
Length = 8765
Score = 1140 bits (575), Expect = 0.0
Identities = 667/699 (95%)
Strand = Plus / Plus
Query: 89 tctatttccttcttcttaacgaggtttctccactccctccgacttattaattacacaacg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5469 tctatttccttcttcttaacgaggtttctccactccctccgacttattaattacacaacg 5528
Query: 149 ttctaatgtttacatgacttgtataatgaacaaaactctaatgattagaaaagcaagatc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5529 ttctaatgtttacatgacttgtataatgaacaaaactctaatgattagaaaagcaagatc 5588
Query: 209 attttcactttattcttcgttatccgattcttctgcacccaaaagttgagtctgattggt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5589 attttcactttattcttcgttatccgattcttctgcacccaaaagttgagtctgattggt 5648
Query: 269 cgtggcacttatcaatccacgtttgactacgtgcaatgcgttgggaatcgttactccctt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5649 cgtggcacttatcaatccacgtttgactacgtgcaatgcgttgggaatcgttactccctt 5708
Query: 329 ttcggatattcctgcaaattctttgccccacatcagaatacgttctcttattctattagc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5709 ttcggatattcctgcaaattctttgccccacatcagaatacgttctcttattctattagc 5768
Query: 389 tttaataatacagtttcgtatcttttgtaaatttctgataaattcttgatttctttgtaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5769 tttaataatacagtttcgtatcttttgtaaatttctgataaattcttgatttctttgtaa 5828
Query: 449 agctatctgagctaattgtcttgttgtctcgatgtcatcagagatttcattacttatcgg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5829 agctatctgagctaattgtcttgttgtctcgatgtcatcagagatttcattacttatcgg 5888
Query: 509 cacggtcatatcaccagtatgaaaatgtttcggtatgagtgataagcaggtttcagattc 568
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5889 cacggtcatatcaccagtatgaaaatgtttcggtatgagtgatagcaaggtttcagattc 5948
Query: 569 ccgtaactttgataatccaaaaaatgcttcttcatcctcaggnttaattgatttgctatt 628
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5949 cgtaaactttgataatccaaaaaatgcttcttcatcctcaggtttaattgatttgctatt 6008
Query: 629 tgaactggcactgatataaatctcatcgnncncttctttgaaagtcagcttatgatcttt 688
||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
Sbjct: 6009 tgaactggcactgatataattctcatcgtcttcttctttgaaagtcagcttatgatcata 6068
Query: 689 ttcaagtagcttcaaagcattcttctttaaagcatttgggaaatttccaaagaaaatttc 748
|||| ||||||||||||||| || | |||||||| |||||||| ||| ||||| || ||
Sbjct: 6069 ttcaggtagcttcaaagcatcctcgtataaagcatctgggaaatctcccaagaagatctc 6128
Query: 749 aagagatttaaagtaattgaaaacctttccttggtcctt 787
||| |||| ||||||||| ||| ||| |||| |||||
Sbjct: 6129 gagaagtttagagtaattgataacattttcttgttcctt 6167
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8303
Number of Sequences: 1807
Number of extensions: 8303
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)