BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZB08RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1761 1213 0.0
>3x_Contig1761
Length = 23186
Score = 1213 bits (612), Expect = 0.0
Identities = 756/791 (95%), Gaps = 10/791 (1%)
Strand = Plus / Minus
Query: 48 cttctcaatttcttgatctttcatttcttgttcgacgttccaaatgcttggatccttgct 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14595 cttctcaatttcttgatctttcatttcttgttcgacgttccaaatgcttggatccttgct 14536
Query: 108 gtaatggataggaacgtattggcgtctaatgtcgtgttctaacaatgatacttcacaact 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14535 gtaatggataggaacgtattggcgtctaatgtcgtgttctaacaatgatacttcacaact 14476
Query: 168 tatgttatcatagtcgatataaataaccttagctgggtaggtttttccaatttcataaac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14475 tatgttatcatagtcgatataaataaccttagctgggtaggtttttccaatttcataaac 14416
Query: 228 ttcttcagcaggtcttttcaactgagcacctatgtgacgttgtgcattgataacacactc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14415 ttcttcagcaggtcttttcaactgagcacctatgtgacgttgtgcattgataacacactc 14356
Query: 288 gacaccagaatttgtgacaccatatatgtcattatgtctgaatctttccactctaactgg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14355 gacaccagaatttgtgacaccatatatgtcattatgtctgaatctttccactctaactgg 14296
Query: 348 aatgatacatcccttgaagaaggttttttcagattcacctgtcaaactcttgaagacttc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14295 aatgatacatcccttgaagaaggttttttcagattcacctgtcaaactcttgaagacttc 14236
Query: 408 gtcaccgtgtagtgggtggaaatcatttcttagttcttcaaatccttccaaaagttccaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14235 gtcaccgtgtagtgggtggaaatcatttcttagttcttcaaatccttccaaaagttccaa 14176
Query: 468 gacaatagtattcaaattgttcaactttctttgacctgtattcttttcaagttcttctgc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14175 gacaatagtattcaaattgttcaactttctttgacctgtattcttttcaagttcttctgc 14116
Query: 528 gtacgcttcgaggttcaaagactcaagtttggttctgcggtctggatcttccctcnataa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 14115 gtacgcttcgaggttcaaagactcaagtttggttctgcggtctggatcttccctcaataa 14056
Query: 588 tccgataaattcgctcatagtacctttgtcttccttttnctgc-atagcatcaggatcaa 646
| |||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||
Sbjct: 14055 ttcgataaattcgctcatagtaccttgttcttcctttt-ctgcaatagcatcaggatcaa 13997
Query: 647 att-caaggcgtcagcagc-acctttgtagccaaagggtattctctggggtgaattcta- 703
||| ||||||||||||||| ||||| ||||||||| |||| ||| ||||||||||||
Sbjct: 13996 attccaaggcgtcagcagcaaccttggtagccaaatggtaatcttctgggtgaattctag 13937
Query: 704 tggcatctaattgatcatgttccaaat-ttcgtaaccgttggtttttttcgtttcaggaa 762
|| |||||| ||||||||||||||||| ||||||| |||||||| |||||||| |||||
Sbjct: 13936 tgccatctagttgatcatgttccaaatcttcgtaa-cgttggttcttttcgttccaggat 13878
Query: 763 tttttccaaaatgcccccgaattc-tgaaaatgggtttcgtaaaaat-tcatgagtaatc 820
| | | ||||||| | |||||| ||||||||| |||||| | ||| ||||||||||||
Sbjct: 13877 atatacaaaaatgcagcagaattcatgaaaatggttttcgttagaatatcatgagtaatc 13818
Query: 821 -attgttggcg 830
||||||||||
Sbjct: 13817 aattgttggcg 13807
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7734
Number of Sequences: 1807
Number of extensions: 7734
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)