BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC45ZB09FM1.SCF screened BAC_end (927 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig628 854 0.0 >3x_Contig628 Length = 1864 Score = 854 bits (431), Expect = 0.0 Identities = 543/575 (94%), Gaps = 4/575 (0%) Strand = Plus / Plus Query: 179 gtttatatattgatccacatttctagtaccactaccaccaccggtcttagaatttctcag 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gtttatatattgatccacatttctagtaccactaccaccaccggtcttagaatttctcag 60 Query: 239 gttcaatgatagcttcttctccagttgttcttgcaaatcagctagctcgtcctgatccga 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gttcaatgatagcttcttctccagttgttcttgcaaatcagctagctcgtcctgatccga 120 Query: 299 actttccctaaatcgtctatccacagcaagaggtaggtctgtaccattttggtactcttc 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 actttccctaaatcgtctatccacagcaagaggtaggtctgtaccattttggtactcttc 180 Query: 359 aaaatcactgttatagttcatatcatcatcaagatcgctcgccagttccgtgtgtgatga 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aaaatcactgttatagttcatatcatcatcaagatcgctcgccagttccgtgtgtgatga 240 Query: 419 atacctcttatccttagagaatgtggtattttccgtagttgtggatgtagctgaattagg 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 atacctcttatccttagagaatgtggtattttccgtagttgtggatgtagctgaattagg 300 Query: 479 tgccaatctcggtacctctatatcatctttattagtaaatgtgcttttcacatcttcaaa 538 |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 301 tgccaatctcggtacctctatatcatctttataagtaaatgtgctttcaacatcttcaaa 360 Query: 539 tgatgtttcttcgacatcattcagtacaactggacgtatagacatcgataatcgaagatt 598 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 361 tgatgtttctccgacatcatccagtacaactggacgtatagacatcgataatcgaagatt 420 Query: 599 ggccctgggc-tttcccctgtttaattctttggttacactccggacatacctttaaagcc 657 | |||||| | |||||| |||||| | ||||| ||||| || |||||||||||| || Sbjct: 421 gtccctggtcttttcccttgtttattcctttgtttacatctcgaacatacctttaatgct 480 Query: 658 ttcggcatttgagtatctatttaaccttaaac-aaataatcatattcgggagacgggaat 716 | || |||| ||||||| |||||||||||| ||||||||||||||| |||||| || Sbjct: 481 tccgtcattgatgtatcta-ttaaccttaaacaaaataatcatattcgtgagacgtgata 539 Query: 717 ctatattaattgctggttaaaaccgttgttgagac 751 |||||||||||||| ||| |||||| ||||||||| Sbjct: 540 ctatattaattgct-gtttaaaccgctgttgagac 573 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6286 Number of Sequences: 1807 Number of extensions: 6286 Number of successful extensions: 50 Number of sequences better than 1.0e-20: 1 length of query: 927 length of database: 10,358,551 effective HSP length: 16 effective length of query: 911 effective length of database: 10,329,639 effective search space: 9410301129 effective search space used: 9410301129 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)