BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZB09RM1.SCF screened BAC_end
(787 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1462 708 0.0
>3x_Contig1462
Length = 8247
Score = 708 bits (357), Expect = 0.0
Identities = 385/389 (98%), Gaps = 4/389 (1%)
Strand = Plus / Plus
Query: 49 tggttttgaagttcc-cggcagttaatccagcttcgtgtttgtgattatataaaggtacg 107
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4903 tggttttgaagttccacggcagttaatccagcttcgtgtttgtgattatataaaggtacg 4962
Query: 108 ggttggacaggtccttttgttggtctagtgaaggcagggtgtgactttcttgtgccaata 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4963 ggttggacaggtccttttgttggtctagtgaaggcagggtgtgactttcttgtgccaata 5022
Query: 168 atcggttctactttggtaatcctctttccttttttgcctgggtctaacatagaaatcatc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5023 atcggttctactttggtaatcctctttccttttttgcctgggtctaacatagaaatcatc 5082
Query: 228 attttaattgattcggtgttttcgagtctagtattgattgtttaatcatggatgattcta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5083 attttaattgattcggtgttttcgagtctagtattgattgtttaatcatggatgattcta 5142
Query: 288 tgcttcagaaacgcgtggaaggtctggagagacagatctcgatgtatgaacggttattcc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5143 tgcttcagaaacgcgtggaaggtctggagagacagatctcgatgtatgaacggttattcc 5202
Query: 348 aatcgtttagttcgaagttagatcatcatttcaagaaatacgatgtattggtatcgtcac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5203 aatcgtttagttcgaagttagatcatcatttcaagaaatacgatgtattggtatcgtcac 5262
Query: 408 agca-ca-cagataaacat-cttacagag 433
|||| || ||||||||||| |||||||||
Sbjct: 5263 agcagcagcagataaacatccttacagag 5291
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4557
Number of Sequences: 1807
Number of extensions: 4557
Number of successful extensions: 291
Number of sequences better than 1.0e-20: 1
length of query: 787
length of database: 10,358,551
effective HSP length: 16
effective length of query: 771
effective length of database: 10,329,639
effective search space: 7964151669
effective search space used: 7964151669
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)