BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZB11RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1476 1443 0.0
>3x_Contig1476
Length = 8689
Score = 1443 bits (728), Expect = 0.0
Identities = 843/870 (96%), Gaps = 9/870 (1%)
Strand = Plus / Plus
Query: 47 aattgttggagcatacaatttagaatgacttctacaattttaccactcaattgaattcca 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 aattgttggagcatacaatttagaatgacttctacaattttaccactcaattgaattcca 2006
Query: 107 attttgcaaaattttagacctaatcgatagttcgtatcctttatatactttaaaatccaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 attttgcaaaattttagacctaatcgatagttcgtatcctttatatactttaaaatccaa 2066
Query: 167 atcaaagtaccaatgccttaccccgaattaccaatacaaatgactagcctaagatgaaaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 atcaaagtaccaatgccttaccccgaattaccaatacaaatgactagcctaagatgaaaa 2126
Query: 227 ccttaagacagacacaagaaaatatactttcgaacaatgacaaatgttcaaaatgtataa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 ccttaagacagacacaagaaaatatactttcgaacaatgacaaatgttcaaaatgtataa 2186
Query: 287 taatgtataatgatgtataataacattgatatttctgagggagtgctgatccttttgcaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 taatgtataatgatgtataataacattgatatttctgagggagtgctgatccttttgcaa 2246
Query: 347 cttactcatcttatataagctctcatcgggtcctgcaataaagttcctctccctttagta 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 cttactcatcttatataagctctcatcgggtcctgcaataaagttcctctccctttagta 2306
Query: 407 agagctgacacattttttttttctgtctacatttaataagcaagtattcgcaacgagtgt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 agagctgacacattttttttttctgtctacatttaataagcaagtattcgcaacgagtgt 2366
Query: 467 gatgcagggatgcttatcgtggtgcattaccctgattagtcagggtaataaactcagtgt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2367 gatgcagggatgcttatcgtggtgcattaccctgattagtcagggtaataaactcagtgt 2426
Query: 527 ctgcttcaacacatttgacttttatggttttcagtcaagtaaatattgaaatccatatga 586
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2427 ctgcttcaacacatttgacttttatggttttcagtcaagtaaatattgacatccatatga 2486
Query: 587 aaggatgaacttattattcaattcagagtaattatttgttaataacgataacacattaca 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2487 caggatgaacttattattcaattcagagtaattatttgttaataacgataacacattaca 2546
Query: 647 ttctttattaatgatgtntttcttggct-aaaaacgaataatattgatcatagancactg 705
||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 2547 ttctttattaatgatgt-tttcttggctaaaaaacgaataatattgatcatagacaactg 2605
Query: 706 cagtgatcgagcaaactacacctcgttataagaaatacgntatattggatattctggtga 765
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 2606 cagtgatcgagcaaactacacctcgttataagacatacgttatattggatattctggtga 2665
Query: 766 acgttttatttactaaggaaaaaaataccatggaataggttggcccttgttaatcatcat 825
||||||||| |||||||||||||||||| || ||||| ||| | ||||||||||||||||
Sbjct: 2666 acgttttatatactaaggaaaaaaatacgatagaata-gtttgtccttgttaatcatcat 2724
Query: 826 aaggttatctccaaatttaagggagaaaggaaaaggagctttcaagggtttacctttcgg 885
||||||||| ||||||||| ||||| | ||||| |||| | ||| ||| |||| |||||
Sbjct: 2725 -aggttatcttcaaatttaa-ggagagaagaaaaagagcatacaa-ggtatacc-ttcgg 2780
Query: 886 acctttatttcatactttttgagtcacaaa 915
||||||| |||||||||||| |||||||||
Sbjct: 2781 accttta-ttcatacttttt-agtcacaaa 2808
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8988
Number of Sequences: 1807
Number of extensions: 8988
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)