BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZC01RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1666 1481 0.0
>3x_Contig1666
Length = 16162
Score = 1481 bits (747), Expect = 0.0
Identities = 822/839 (97%), Gaps = 6/839 (0%)
Strand = Plus / Plus
Query: 48 atatatgtactgaagtcatcaatcatttggtcaatcatcatcatggtaggctttttgagt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12648 atatatgtactgaagtcatcaatcatttggtcaatcatcatcatggtaggctttttgagt 12707
Query: 108 tttctagcgtattctaatctgattgatattatttcttggatcaaacgaagtggaaacgtt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12708 tttctagcgtattctaatctgattgatattatttcttggatcaaacgaagtggaaacgtt 12767
Query: 168 aaaagagaatgcaatttgtccaccggtaaaggtaagcgcatttcgtgaatagaattttgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12768 aaaagagaatgcaatttgtccaccggtaaaggtaagcgcatttcgtgaatagaattttgt 12827
Query: 228 tgcttcaaaaacaccaatttgctcttgaacatccaaggggcatgcttgaaaaagatcttt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12828 tgcttcaaaaacaccaatttgctcttgaacatccaaggggcatgcttgaaaaagatcttt 12887
Query: 288 ttctgaaagataccttcgatgtccttctctttcataatttgttctgcgaaagatctgtca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12888 ttctgaaagataccttcgatgtccttctctttcataatttgttctgcgaaagatctgtca 12947
Query: 348 tttttgaagataccttcagtgtctaacgaatctttcgtaaaagttacatccaaatcatca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12948 tttttgaagataccttcagtgtctaacgaatctttcgtaaaagttacatccaaatcatca 13007
Query: 408 ttttgagtccattgtttcaatgcctctatctcatattgtaatccttcgtacgagtttatc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13008 ttttgagtccattgtttcaatgcctctatctcatattgtaatccttcgtacgagtttatc 13067
Query: 468 aacgaattgagtgcttcaattctgcttacaaaattagaggttttggttacaggtttctcg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13068 aacgaattgagtgcttcaattctgcttacaaaattagaggttttggttacaggtttctcg 13127
Query: 528 agattcatattggggagatttttccaatatccaaccactttgtaatatttattcaatagt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13128 agattcatattggggagatttttccaatatccaaccactttgtaatatttattcaatagt 13187
Query: 588 attttggcttcttctatgacaacttcagggttttcttctttttcatttttatagttcaag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13188 attttggcttcttctatgacaacttcagggttttcttctttttcatttttatagttcaag 13247
Query: 648 atttcttcgaatacctcatcagcagtagttttagaatattccaatgatttacgttgatct 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13248 atttcttcgaatacctcatcagcagtagttttagaatattccaatgatttacgttgatct 13307
Query: 708 tcgacggttcta-cattttaccaagcctttaagttct-accatattagatcattatgatt 765
|||||||||||| ||||| |||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 13308 tcgacggttctaccatttaaccaagcc-ttaagttctaaccatattagatcattatgatt 13366
Query: 766 cagtaaaa-ttcatcaggcttgcgtttcgcaagttttgtcttctcactctttaccatatt 824
|||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 13367 cagtaaaatttcatcaggcttgcgtttcgcaagttttgtcttctcactcttaacaatatc 13426
Query: 825 accattccaaacgcttgaaagcataagcttgccattttagcctttcctctgactaaatg 883
||||||| ||||||| || ||||| || ||||| | |||||||| |||||||||||||
Sbjct: 13427 accattcaaaacgctcgagagcat-agtctgccactctagccttt-ctctgactaaatg 13483
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8925
Number of Sequences: 1807
Number of extensions: 8925
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)